View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16843_high_4 (Length: 325)
Name: NF16843_high_4
Description: NF16843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16843_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 10100640 - 10100332
Alignment:
| Q |
1 |
tcacaaaatcactaatattttatttgcaaagtacttacagcatcagtcatgtaagctttatcaggatcatcgacaatttgagagagtgttccatcataat |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10100640 |
tcacaaaatcactaatattt-atttgcaaagtacttacagcatcagtcatgtaagctttatcaggatcatcgacaatttgagagagtgttccatcataat |
10100542 |
T |
|
| Q |
101 |
ctaagaacacaacaatctttttctctcttgcaatgttcatcactttttcaaaattttccaatgctgaagggtggttttcctttaagcaaaagagttaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
10100541 |
ctaagaacacaacaatctttttctctcttgcaatgttcatcactttttcaaaattttccaatgcagaaggatggttttcctttaagcaaaagagttaata |
10100442 |
T |
|
| Q |
201 |
catcagtggattttagatta-gaaaaaagcaaatattgtaaaagcaatatgaagaatgaacaatagtagatgtttacatacgataatagatcattactca |
299 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10100441 |
catcagtggattttagattataaaaaaaacaaatattgtaaaagcaatatgaagaatgaacaatagtagatgtttacatacgataatggatcattactca |
10100342 |
T |
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| Q |
300 |
tgaatgcatt |
309 |
Q |
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|||||||||| |
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| T |
10100341 |
tgaatgcatt |
10100332 |
T |
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