View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16843_high_5 (Length: 271)
Name: NF16843_high_5
Description: NF16843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16843_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 27944299 - 27944481
Alignment:
| Q |
14 |
atgaagcaacaacctagaaaaatcctaactagtatcagtttccctttaaccgtcaactaattccacatgtcatgcatctatttgttatca----ttcatt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
27944299 |
atgaagcaacaacctagaaaaatcctaacta---tcagtttccctttaaccgtcaactaattccacgtgtcatgcatctatttgttatcactcattcatt |
27944395 |
T |
|
| Q |
110 |
attatccccttttttcagtaatcgtaaccactgtataaagtctcactcagcacccaacttaacatatcataacataccatactacg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27944396 |
attatccccttttttcagtaatcgtaaccactatataaagactcactcagcacccaacttaacatatcataacataccatactacg |
27944481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 107 - 271
Target Start/End: Original strand, 27435881 - 27436048
Alignment:
| Q |
107 |
attattatcccctttt-ttcagtaatcgtaaccactgtataaagtctcactcagcacccaacttaacatatcataacataccatactac--gtacgatca |
203 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||| |
|
|
| T |
27435881 |
attataatcccctttttttcagtaatcgtaaccactatataaagactcactcagcacccaacttaacatatcataacataccatactaccatcaagttca |
27435980 |
T |
|
| Q |
204 |
agtcagaagaagaagtcatgaatcatcgtaaccaaactttcatgctgttctctgttcttttcctgttc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27435981 |
agtcagaagaagaagtcatgaatcatcgtaaccaaactttcatgctgttctctgtccttttcctgttc |
27436048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 27550579 - 27550501
Alignment:
| Q |
68 |
aactaattccacatgtcatgcatctatttgttatcattcattattatccccttttttcagtaatcgtaaccactgtataaag |
149 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||| ||||||||||||| || || ||||||||||||||| ||||||| |
|
|
| T |
27550579 |
aactaattccacgtgtcctgcatctatttgttatcactcattattatccctttatt---gtaatcgtaaccactatataaag |
27550501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University