View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16843_low_1 (Length: 629)

Name: NF16843_low_1
Description: NF16843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16843_low_1
NF16843_low_1
[»] chr1 (2 HSPs)
chr1 (18-395)||(44841915-44842292)
chr1 (459-618)||(44841668-44841849)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 44842292 - 44841915
Alignment:
Q  18 acttatcgttggtggcgacatcgcagaagttgcaagggatgaagtattggctttgagaggaaaaaacagttatactcgttttctttgattttgaaaaaag 117  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44842292 acttatcgttggtggcgacatcacagaagttgcaagggatgaactattggctttgagaggaaaaaacagttatactcgttttctttgattttgaaaaaag 44842193  T
Q  118 agggagaaaggagattgacactagtatataatctcctcttccaaaagtaaagaaagttaaaatcagttattcatttaaaggttagaaatccgaaggagtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44842192 agggagaaaggagattgacactagtatataatctcctcttccaaaagtaaagaaagttaaaatcagttattcatttaaaggttagaaatccgaaggagtt 44842093  T
Q  218 tttgggtttattagactttagataatggacatctcagtgttagagtttgagtttcacacatgggccaacaatttcctaatggctgataaagtaataaatn 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44842092 tttgggtttattagactttagataatggacatctcagtgttagagtttgagtttcacacatgggccaacaatttcctaatggctgataaagtaataaata 44841993  T
Q  318 nnnnnnnnnnnnnnnnnnnnnnntgcaattgattgcatgcatcacagtagttatttgatgaatcaagagatggttgag 395  Q
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44841992 aaaactaaaaaaagaaaaagaaatgcaattgattgcatgcatcacagtagttatttgatgaatcaagagatggttgag 44841915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 459 - 618
Target Start/End: Complemental strand, 44841849 - 44841668
Alignment:
Q  459 ggaaatagtttcatcatcaaagtagtaattgtcatgattccttggaaatgtttgttgacattaacttgagagatgaatatg------------------- 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       
T  44841849 ggaaatagtttcatcatcaaagtagtaattgtcatgattccttggaaatgtttgttgacattaacttgagagatgaatatgatttcctgcgtgtgtacct 44841750  T
Q  540 ---aatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcatgtatatctgtg 618  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44841749 gtcaatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcatgtatatctgtg 44841668  T

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