View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16844_high_2 (Length: 355)
Name: NF16844_high_2
Description: NF16844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16844_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 346
Target Start/End: Original strand, 41200677 - 41201011
Alignment:
| Q |
8 |
agtgtaacactccaaaatttatccgtgtatccttccttatgctcaattttgaagggattgttgaagtgtataggttcatctgccttacaattaattattt |
107 |
Q |
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| T |
41200677 |
agtgtaacactccataatttatccatgtatcct----tatgctcaattttgaagggagtgttgaagtgtataggttcatctgccttacaattaattatta |
41200772 |
T |
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| Q |
108 |
ataacaagcttaaagtaccttaatgtgtgagaaaaagcacattatgttcccttcgtgtattcaaagttgaaaactgtgaacgcgaagttagcgcgttttc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
41200773 |
ataacaagcttaaagtaccttaatgtgtgagaaaaagcacattatgttcccttcgtgtattcaaagttgaaaactgtgaacgccaagttagcgtgttttc |
41200872 |
T |
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| Q |
208 |
aaacttgtgttatttgtacttcgtatgcacggcatggagtgtttgtgcgtgaaagtatcatgttttgagcacttgcctcatctttacaacattgaagctt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41200873 |
aaacttgtgttatttgtacttcgtatgcacggcatggagtgtttgtgcgtgaaagtatcatgttttgagcacttgcctcatcttttcaacattgaagctt |
41200972 |
T |
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| Q |
308 |
tttgaggtgatccttgcctcttgtgaacctttgatgatg |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
41200973 |
tttgaggtgatccttgcctcttgtgaacctttgatgatg |
41201011 |
T |
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