View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16844_high_5 (Length: 211)
Name: NF16844_high_5
Description: NF16844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16844_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 6214770 - 6214591
Alignment:
| Q |
14 |
tatactatactatactactaattatgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagt |
113 |
Q |
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| T |
6214770 |
tatactatactatactactaattatgttatagtatttcctgaattaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagt |
6214671 |
T |
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| Q |
114 |
attctaccaactataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatat |
193 |
Q |
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| T |
6214670 |
attctgccaactataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatat |
6214591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 6177239 - 6177104
Alignment:
| Q |
37 |
atgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
136 |
Q |
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| T |
6177239 |
atgttgtactatttcctgaatcaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
6177140 |
T |
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| Q |
137 |
aatatcaagtggtataagcatttggatgtacaggta |
172 |
Q |
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| T |
6177139 |
aatatcaagtggtataagcatatggatatacaggta |
6177104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 6207025 - 6206916
Alignment:
| Q |
63 |
tgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggattaatatcaagtggtataagcatttgga |
162 |
Q |
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| T |
6207025 |
tgtctaatgctctttttcagtggtgtgggttggacagatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatgga |
6206926 |
T |
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| Q |
163 |
tgtacaggta |
172 |
Q |
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| T |
6206925 |
tatacaggta |
6206916 |
T |
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