View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16844_low_1 (Length: 497)
Name: NF16844_low_1
Description: NF16844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16844_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 7 - 487
Target Start/End: Original strand, 38260748 - 38261227
Alignment:
| Q |
7 |
gacatcatcatcaataacaacaagaacaacaacatgatgatgacaatgaatacttatgttgctgcttcttctcatcttgatctccatgtaggcttatcat |
106 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260748 |
gacatcatcatcaataacaacaagaataacaacatgatgatgacaatgaatacttatgttgctgcttcttctcatcttgatctccatgtaggcttatcat |
38260847 |
T |
|
| Q |
107 |
cacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatgttggggatgttaacaagaacgatatgagaaagaagaagaagagaaatga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260848 |
cacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatgttggg-atgttaacaagaacgatatgagaaagaagaagaagagaaatga |
38260946 |
T |
|
| Q |
207 |
aaatattaatgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaattt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260947 |
aaatattaatgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaattt |
38261046 |
T |
|
| Q |
307 |
gctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattc |
406 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
38261047 |
gctaatcatgtttcatcaagtcactgcaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcagattc |
38261146 |
T |
|
| Q |
407 |
aaaagctcaatgatggaacaactacttttgttcctgttattgcttgtggtgataagtcaaatgcttctgtcaatgatgatg |
487 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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|
| T |
38261147 |
aaaagctcaatgatggaacaactacttttgttcctgttattgcttgtggtgataagtcacatgcttatgtcaatgatgatg |
38261227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 24 - 487
Target Start/End: Original strand, 38244467 - 38244927
Alignment:
| Q |
24 |
caacaagaacaacaacatgatgatgacaatgaatacttatgttgctgcttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactg |
123 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||||||||| | || ||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
38244467 |
caacaacaacaacaacaagatgatgaaaatgaatacttcta---ctacttcttctcatcttgatcttcatgtaggcttatcatcacaactacaagaactg |
38244563 |
T |
|
| Q |
124 |
ccttctcaaacaattaatatttcagttgctgatgttggggatgttaacaagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaa |
223 |
Q |
| |
|
||||||||||| || ||| | | ||| |||||||| ||||| |||||||||| |||| || |||||||||||||| ||||||||||| ||||||| | |
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|
| T |
38244564 |
ccttctcaaactatcaatttatttgttactgatgttagggatattaacaagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggta |
38244663 |
T |
|
| Q |
224 |
gaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatc |
323 |
Q |
| |
|
||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38244664 |
aaattcacagcctaccacacgagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatc |
38244763 |
T |
|
| Q |
324 |
aagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatgga |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
38244764 |
aagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgatgga |
38244863 |
T |
|
| Q |
424 |
acaactacttttgttcctgttattgcttgtggtgataagtcaaatgcttctgtcaatgatgatg |
487 |
Q |
| |
|
| ||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||| |||||| |
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|
| T |
38244864 |
agaactacttttgttcctgttgttgcttgtgctgataagtcacatgcttcaatcaataatgatg |
38244927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 210 - 451
Target Start/End: Complemental strand, 47285737 - 47285499
Alignment:
| Q |
210 |
tattaatgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgct |
309 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| ||||| ||| ||||||| ||| | |||||| | ||||||||| || | | ||||||||| ||||| ||| |
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|
| T |
47285737 |
tattgatgatggtagaatccacagtctacctcacaataaacatggaccgtacacgtgttcagagtgcaacaaagtaatagcaacatcacagaaattcgct |
47285638 |
T |
|
| Q |
310 |
aatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaa |
409 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||| || ||||||| |
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|
| T |
47285637 |
gctcatgt---atcaagtcactacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccatatctccagattcaaa |
47285541 |
T |
|
| Q |
410 |
agctcaatgatggaacaactacttttgttcctgttattgctt |
451 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
47285540 |
agctcgatgatggaacaactactcttgtttctgtcattgctt |
47285499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 215 - 440
Target Start/End: Complemental strand, 47307289 - 47307067
Alignment:
| Q |
215 |
atgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatca |
314 |
Q |
| |
|
||||||| |||| |||||| ||| ||||||| ||| |||||||||| | ||| |||| || |||||| || | | |||||||||||||||||||| ||| |
|
|
| T |
47307289 |
atgatggtagaacccacagtctatcacacaataaaaatggaccatatacgtgtccaaagtgtaacaaagtactagcaacatcacaaaaatttgctagtca |
47307190 |
T |
|
| Q |
315 |
tgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctc |
414 |
Q |
| |
|
|| |||||| |||||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||| || ||| | | ||||||||| |
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|
| T |
47307189 |
tg---catcaatacactacaagtcagaaagtgaagaagagaaaaaaaagagatacatgtctaggatccgaaagagaccagatctccgattccaaaagctc |
47307093 |
T |
|
| Q |
415 |
aatgatggaacaactacttttgttcc |
440 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
47307092 |
aatgatggaacaactacttttgttcc |
47307067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 323 - 451
Target Start/End: Complemental strand, 2589674 - 2589546
Alignment:
| Q |
323 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatgg |
422 |
Q |
| |
|
||||||||||||||| |||| | |||||| ||||||||||||||||| |||| ||| |||||||| || ||| | |||||||||||||||||||| |
|
|
| T |
2589674 |
caagtcactacaagtctgaaactctagaagagagaaaaaagagatacatgtctaagatccgaaagagaccaaatctccggattcaaaagctcaatgatgg |
2589575 |
T |
|
| Q |
423 |
aacaactacttttgttcctgttattgctt |
451 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |
|
|
| T |
2589574 |
aacaactacttttgttccagttgttgctt |
2589546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 439
Target Start/End: Original strand, 2589833 - 2589914
Alignment:
| Q |
358 |
aaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttc |
439 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| || ||||||||||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
2589833 |
aaaaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttc |
2589914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 440
Target Start/End: Complemental strand, 10299735 - 10299617
Alignment:
| Q |
323 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaa-gagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatg |
421 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||| ||||||||| |||| ||| |||||| || ||| || |||||||||||||||||| |
|
|
| T |
10299735 |
caagtcactacaagtctgaaactctagaagagagaaaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgata |
10299636 |
T |
|
| Q |
422 |
gaacaactacttttgttcc |
440 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10299635 |
gaacaactacttttgttcc |
10299617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 438
Target Start/End: Original strand, 22222449 - 22222647
Alignment:
| Q |
238 |
ccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaa-tatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaag |
336 |
Q |
| |
|
|||||||| ||| ||||| ||||| | ||| |||| |||||||||| || || |||||| ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
22222449 |
ccacacaataaacatggatcatacacgtgtgcaaagtgcaacaaaagtaatttcaacatcccaaaaatttgctagtcatgt---ggcaagtcactacaat |
22222545 |
T |
|
| Q |
337 |
ttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttg |
436 |
Q |
| |
|
|| |||| | ||||||| ||||||||||||||||| |||||||| | |||||| | ||| || |||||||| ||||||| ||||||||| || |||| |
|
|
| T |
22222546 |
tttgaaactcaagaagaaagaaaaaagagatacatgtctaggatcccaaagagaacaaatctgcagattcaaaaactcaatgttggaacaacaacatttg |
22222645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 439
Target Start/End: Complemental strand, 22222382 - 22222289
Alignment:
| Q |
348 |
agaagacagaaaaaagagatacatttctaggattcgaaagagg--ccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttc |
439 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||| |||||||| || ||| | ||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
22222382 |
agaagagaaaaaaaagagatacatgtctaggatccgaaagagtgaccaaatctccggattcataagatcaatgatggaacaactacttttgttc |
22222289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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