View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16844_low_13 (Length: 243)

Name: NF16844_low_13
Description: NF16844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16844_low_13
NF16844_low_13
[»] chr5 (3 HSPs)
chr5 (14-236)||(5347943-5348167)
chr5 (35-236)||(36429532-36429733)
chr5 (136-208)||(26380043-26380115)
[»] chr3 (3 HSPs)
chr3 (14-236)||(54560253-54560477)
chr3 (32-236)||(50837933-50838139)
chr3 (35-236)||(47470944-47471144)
[»] chr2 (3 HSPs)
chr2 (14-219)||(4592847-4593052)
chr2 (101-236)||(10256013-10256148)
chr2 (35-139)||(10255919-10256027)
[»] chr8 (3 HSPs)
chr8 (14-236)||(14790893-14791121)
chr8 (35-236)||(20111960-20112160)
chr8 (57-128)||(18308842-18308911)
[»] chr6 (4 HSPs)
chr6 (25-236)||(15347663-15347876)
chr6 (32-236)||(17732490-17732698)
chr6 (32-236)||(6009103-6009313)
chr6 (35-236)||(30709739-30709944)
[»] chr1 (1 HSPs)
chr1 (32-236)||(47445456-47445660)
[»] scaffold0102 (1 HSPs)
scaffold0102 (35-236)||(32602-32803)
[»] chr4 (3 HSPs)
chr4 (35-236)||(27455168-27455371)
chr4 (32-115)||(49681835-49681918)
chr4 (124-236)||(49681738-49681850)
[»] chr7 (2 HSPs)
chr7 (73-220)||(36067603-36067750)
chr7 (32-69)||(36067544-36067581)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 5347943 - 5348167
Alignment:
Q  14 tccagaaaaaatttaagaaacaacaacatcatcatcaacatcacacactttctaatgattctc--tctctcttgtttgttaccttcttcaattaatcaac 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  5347943 tccagaaaaaatttaagaaacaacaacatcatcatcaacatcacacactttctaatgattctctctctctcttgtttgttaccttcttgaattaatcaac 5348042  T
Q  112 aacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacacca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5348043 aacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacacca 5348142  T
Q  212 acatcaacatcaacgtttcatctca 236  Q
    ||||||||||||||||||| |||||    
T  5348143 acatcaacatcaacgtttcttctca 5348167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 36429532 - 36429733
Alignment:
Q  35 aacaacatcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaa 134  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  36429532 aacaacatcatcattaacatcacacactttataatgattctctctctcttgtttgttaccttcttgaattaatcaacaacaaccttttggaattcatcaa 36429631  T
Q  135 caacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatct 234  Q
    ||||| || |||||| ||||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||| ||||||||||| ||||| ||| |||    
T  36429632 caacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaaggtttatgatgaatagcatggacaacaacatcaacagcaacggttcttct 36429731  T
Q  235 ca 236  Q
    ||    
T  36429732 ca 36429733  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 26380043 - 26380115
Alignment:
Q  136 aacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaaca 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||||    
T  26380043 aacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaaca 26380115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 54560253 - 54560477
Alignment:
Q  14 tccagaaaaaatttaagaaacaacaacatcatcatcaacatcacacactttctaatgattctc--tctctcttgtttgttaccttcttcaattaatcaac 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  54560253 tccagaaaaaatttaagaaacaacaacatcatcatcaacatcacacactttctaatgattctctctctctcttgtttgttaccttcttgaattaatcaac 54560352  T
Q  112 aacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacacca 211  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54560353 tacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacacca 54560452  T
Q  212 acatcaacatcaacgtttcatctca 236  Q
    ||||||||||||||||||| |||||    
T  54560453 acatcaacatcaacgtttcttctca 54560477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 50838139 - 50837933
Alignment:
Q  32 aacaacaacatcatcatcaacatcacacactttctaatgattctctctctct--tgtttgttaccttcttcaattaatcaacaacaaccctttggaattc 129  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||    
T  50838139 aacaacatcatcatcatcaacctcacacactttctaatgattctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattc 50838040  T
Q  130 atcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgttt 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  50838039 atcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacagcaacgttt 50837940  T
Q  230 catctca 236  Q
    | |||||    
T  50837939 cttctca 50837933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 47470944 - 47471144
Alignment:
Q  35 aacaacatcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaa 134  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  47470944 aacaacatcatcatcaacatcacacactttataatgattctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaa-tcatcaa 47471042  T
Q  135 caacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatct 234  Q
    ||||| || |||||| |||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||| ||| |||    
T  47471043 caacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttataatgaatagcatgaacaacaacatcaacatcaacggttcttct 47471142  T
Q  235 ca 236  Q
    ||    
T  47471143 ca 47471144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 4592847 - 4593052
Alignment:
Q  14 tccagaaaaaatttaagaaacaacaacatcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4592847 tccagaaaaaatttaagaaacaacaacatcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttgaattaatcaacaa 4592946  T
Q  114 caaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4592947 caaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaac 4593046  T
Q  214 atcaac 219  Q
    ||||||    
T  4593047 atcaac 4593052  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 10256013 - 10256148
Alignment:
Q  101 aattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatag 200  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| | |||||||||||||    
T  10256013 aattcatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatag 10256112  T
Q  201 catgaacaccaacatcaacatcaacgtttcatctca 236  Q
    |||||||| ||||||||||| ||||| ||| |||||    
T  10256113 catgaacaacaacatcaacagcaacggttcttctca 10256148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 10255919 - 10256027
Alignment:
Q  35 aacaacatcatcatcaacatcacacactttctaatgattctc----tctctcttgtttgttaccttcttcaattaatcaacaacaaccctttggaattca 130  Q
    |||||||||||||||||||||||||||||| |||||||||||    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10255919 aacaacatcatcatcaacatcacacactttataatgattctctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattca 10256018  T
Q  131 tcaacaaca 139  Q
    |||||||||    
T  10256019 tcaacaaca 10256027  T

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Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 14790893 - 14791121
Alignment:
Q  14 tccagaaaaaatttaagaaacaacaacatcatcatcaacatcacacactttctaatgatt------ctctctctcttgtttgttaccttcttcaattaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||    
T  14790893 tccagaaaaaatttaagaaacaacaacatcatcatcaacatcacacactttctaatgattatctctctctctctcttgtttgttaccttcttcaattaat 14790992  T
Q  108 caacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14790993 caacaacaaccctttggaattcatcaacaacagaaagaataacagaaaatatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaac 14791092  T
Q  208 accaacatcaacatcaacgtttcatctca 236  Q
    ||||||||||||||||||||||| |||||    
T  14791093 accaacatcaacatcaacgtttcttctca 14791121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 35 - 236
Target Start/End: Complemental strand, 20112160 - 20111960
Alignment:
Q  35 aacaacatcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaa 134  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  20112160 aacaacatcatcatcaacatcacacactttataatgattctctctct--tgtttgttaccttcttgaattaatcaacagcaaccctttggaattcatcaa 20112063  T
Q  135 caacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaag-gttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatc 233  Q
    ||||| || |||||| |||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||| ||||||||||| ||||| ||| ||    
T  20112062 caacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggttttatgatgaatagcatgaacaacaacatcaacaacaacggttcttc 20111963  T
Q  234 tca 236  Q
    |||    
T  20111962 tca 20111960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 18308842 - 18308911
Alignment:
Q  57 cacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaaccctttggaatt 128  Q
    |||||||| |||||||||||  |||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  18308842 cacactttttaatgattctc--tctcttgtttgttaccatcttgaattaatcaacaacaactctttggaatt 18308911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 15347663 - 15347876
Alignment:
Q  25 tttaagaaacaacaacatcatcatcaacatcacacactttctaatgattctc--tctctcttgtttgttaccttcttcaattaatcaacaacaacccttt 122  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  15347663 tttaagaaacaacaacatcatcatcaacatcgcacactttctaatgattctctctctctcttgtttgttaccttcttaaattaatcaacaacaacccttt 15347762  T
Q  123 ggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15347763 ggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatc 15347862  T
Q  223 aacgtttcatctca 236  Q
    |||||||| |||||    
T  15347863 aacgtttcttctca 15347876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 17732698 - 17732490
Alignment:
Q  32 aacaacaacatcatcatcaacatcacacactttctaatgattctctctctct----tgtttgttaccttcttcaattaatcaacaacaaccctttggaat 127  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||    |||||||||||||||| |||||||||||||||||||||||||||    
T  17732698 aacaacatcatcatcatcaacctcacacactttctaatgattctctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaat 17732599  T
Q  128 tcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgt 227  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  17732598 tcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacagcaacgt 17732499  T
Q  228 ttcatctca 236  Q
    ||| |||||    
T  17732498 ttcttctca 17732490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 6009313 - 6009103
Alignment:
Q  32 aacaacaacatcatcatcaacatcacacactttctaatgattctctctctct------tgtttgttaccttcttcaattaatcaacaacaaccctttgga 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||| |||||||||||||||||||||||||    
T  6009313 aacaacaacatcatcatcaacatcacacactttctaatgattctctctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttgga 6009214  T
Q  126 attcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaac 225  Q
    |||||||||||||| || ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  6009213 attcatcaacaacaaaatgaataacagaaaagatcgtggacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaat 6009114  T
Q  226 gtttcatctca 236  Q
    ||||| |||||    
T  6009113 gtttcttctca 6009103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 30709739 - 30709944
Alignment:
Q  35 aacaacatcatcatcaacatcacacactttctaatgattctc----tctctcttgtttgttaccttcttcaattaatcaacaacaaccctttggaattca 130  Q
    |||||||||||||||||||||||||||||| |||||||||||    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30709739 aacaacatcatcatcaacatcacacactttataatgattctctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattca 30709838  T
Q  131 tcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttc 230  Q
    ||||||||| || |||||| ||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||| ||||| |||    
T  30709839 tcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacagcaacggttc 30709938  T
Q  231 atctca 236  Q
     |||||    
T  30709939 ttctca 30709944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 47445660 - 47445456
Alignment:
Q  32 aacaacaacatcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaaccctttggaattcat 131  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47445660 aacaacaacatcatcatcaacatcacacattttctaatgattctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcat 47445561  T
Q  132 caacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttca 231  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||| ||||| |||     
T  47445560 caacaacagaatgaataacagaaaaaatcatgaacttgttggaaaaagaacaaggtttataatgaatagcatgaacaacaacatcaacagcaacggttct 47445461  T
Q  232 tctca 236  Q
    |||||    
T  47445460 tctca 47445456  T

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Target: scaffold0102 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 32602 - 32803
Alignment:
Q  35 aacaacatcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaa 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  32602 aacaacatcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttgaaattcatcaa 32701  T
Q  135 caacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatct 234  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||| |||    
T  32702 caacagaatgaataatagaaaatatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttct 32801  T
Q  235 ca 236  Q
    ||    
T  32802 ca 32803  T

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Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 27455168 - 27455371
Alignment:
Q  35 aacaacatcatcatcaacatcacacactttctaatgattctc--tctctcttgtttgttaccttcttcaattaatcaacaacaaccctttggaattcatc 132  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27455168 aacaacatcatcatcaacatcacacactttataatgattctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatc 27455267  T
Q  133 aacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcat 232  Q
    ||||||| || |||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||| |    
T  27455268 aacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacaacaacggttctt 27455367  T
Q  233 ctca 236  Q
    ||||    
T  27455368 ctca 27455371  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 49681918 - 49681835
Alignment:
Q  32 aacaacaacatcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaaca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  49681918 aacaacaacatcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttgaattcatcaacaaca 49681835  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 49681850 - 49681738
Alignment:
Q  124 gaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatca 223  Q
    |||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||    
T  49681850 gaattcatcaacaacataatgaataacataaaagatcatgaaattgttggaaaaagaacaacgtttatgatgaatagcatgaacaacaacatcaacaaca 49681751  T
Q  224 acgtttcatctca 236  Q
    ||| ||| |||||    
T  49681750 acgattcttctca 49681738  T

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Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 36067603 - 36067750
Alignment:
Q  73 tctctctctcttgtttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttg 172  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36067603 tctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttg 36067702  T
Q  173 gaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaaca 220  Q
    |||||||||||| | ||||||||||||||||||||| |||||||||||    
T  36067703 gaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaaca 36067750  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 36067544 - 36067581
Alignment:
Q  32 aacaacaacatcatcatcaacatcacacactttctaat 69  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  36067544 aacaacaacatcatcttcaacatcacacactttctaat 36067581  T

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