View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16844_low_3 (Length: 396)
Name: NF16844_low_3
Description: NF16844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16844_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 93 - 381
Target Start/End: Original strand, 1723387 - 1723680
Alignment:
| Q |
93 |
agcacgtttgcaaagaaaacaactaggaacgagggagtaaatctac---------agacactaaccagagttctaaactcatcttcggtgagatgaaaaa |
183 |
Q |
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| T |
1723387 |
agcacgtttgcaaagaaaacaactaggaacgagggagtaaatctacagacactacagacactaaccagagttctaaactcatcttcggtgagatgaaaaa |
1723486 |
T |
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| Q |
184 |
aggccaggcacactttaggatcctgtgatgtttttgtaattggtattattaattgtcaaatgcatatgagaagagaggtaattaattacaggattgcaat |
283 |
Q |
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| T |
1723487 |
aggccaggcacactttagggtcctgtgatgtttttgtaattggtattattaattgtcaaatgcatatgagaagagaggtaatttattacaggattgcaat |
1723586 |
T |
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| Q |
284 |
atactactagtatatatctctaattgtatatagattacactttaaatcattttaggaagtcaaatatattcttgctcaaattaatacgatgaaatatc |
381 |
Q |
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| T |
1723587 |
atactactcg----tatctctaattatatatagattacactttaaatcattttaggaagtcaaatatattcttgctcaaactaatacgatgaaatatc |
1723680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 1723166 - 1723240
Alignment:
| Q |
19 |
taggcagatgtgtcattgcattatgtttccacaacacttactgacatggaatatgaataagaagctaaaaatata |
93 |
Q |
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| T |
1723166 |
taggcagatgtgtcattgcattatttttccacaacacttactgacatggaatatgaataagaagctaaaaatata |
1723240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 10304466 - 10304299
Alignment:
| Q |
19 |
taggcagatgtgtcattgcattatgtttccacaacacttactgacatggaatatgaataagaagct-aaaaatatagcacgtttgcaaagaaaacaacta |
117 |
Q |
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| T |
10304466 |
taggcagatgtgtcattgcattgtttttccacaacacttattgacatggagtatgaataagaagctgaaaactacagcacgtttgcaaagaaaacaaata |
10304367 |
T |
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| Q |
118 |
ggaacgagggagtaaatctacagacactaa--ccagagttctaaactcatcttcggtgagatgaaaaa |
183 |
Q |
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| T |
10304366 |
ggaacaagggaataaatttatagacactaactctagagttctaaactcatcctcagtgagatgaaaaa |
10304299 |
T |
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