View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16844_low_4 (Length: 395)
Name: NF16844_low_4
Description: NF16844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16844_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 40775843 - 40776218
Alignment:
| Q |
8 |
gacatcatcatctcatgtatgattttctggactgagttttgagcatcacttgggtcagcatcaccagaaagagatggttgatattgattttgttgcagtg |
107 |
Q |
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| T |
40775843 |
gacatcatcatctcatgtatgattttctggactgagttttgagcatcacttgggtcagcatcaccagaaagagatggttgatattgattttgttgcagtg |
40775942 |
T |
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| Q |
108 |
aaatattagctggtgaatttgttgtattcatttgattgggaggcgttaaaatggatcgaggtgtttgtggggggttattagatgaggatggtgtaggtgg |
207 |
Q |
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| T |
40775943 |
aaatattagctggtgaatttgttgtattcatttgattgggaggcgttaaaatggatcgaggtgtttgtggggggttattagatgaggatggtgtaggtgg |
40776042 |
T |
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| Q |
208 |
tgactgaaaaggggatgagtttggctgggcctgtggcacagtactggaggaaccaggggatggaatctgaacagaattacctccatatggactgcttgca |
307 |
Q |
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| T |
40776043 |
tgactgaaaaggggatgagtttggctgggcctgtggcacagtactggaggaaccaggggatggaatctgaacagaattacctccatatggactgcttgca |
40776142 |
T |
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| Q |
308 |
ttgttcattgaattttgtctagaattcacagagttttggtggagaagtccaacaatagtgcttgtggttgttgatg |
383 |
Q |
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| T |
40776143 |
ttgttcattgaattttgtctagaattcacagagttttggtggagaagtccaacaatagtgcttgtggttgttgatg |
40776218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 185 - 375
Target Start/End: Complemental strand, 10078899 - 10078709
Alignment:
| Q |
185 |
ttagatgaggatggtgtaggtggtgactgaaaaggggatgagtttggctgggcctgtggcacagtactggaggaaccaggggatggaatctgaacagaat |
284 |
Q |
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| T |
10078899 |
ttagatgaggacggtgt---tggtgaatgaaaaggggacgagtttggttgtgcctgtggcactgtactgcatgaacctggggatggaatatgagctgaac |
10078803 |
T |
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| Q |
285 |
tacctccatatggactgcttgcattgttcattgaattt---tgtctagaattcacagagttttggtggagaagtccaacaatagtgcttgtggt |
375 |
Q |
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| T |
10078802 |
tacctccatatggactgcttgcattgttcattgaattttgctgtctagcgttcatagagttctggtggagaagtccaacaatggtgcttgtggt |
10078709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 10079074 - 10078995
Alignment:
| Q |
7 |
ggacatcatcatctcatgtatgattttctggactgagttttgagcatc---acttgggtcagcatcaccagaaagagatg |
83 |
Q |
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| T |
10079074 |
ggacatcatcatgtcgtgaattattttctggaccgagttctgagcatcattactagggtcagcttcaccagaaacagatg |
10078995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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