View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16844_low_8 (Length: 325)
Name: NF16844_low_8
Description: NF16844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16844_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 42850173 - 42850475
Alignment:
| Q |
17 |
taaacaacccacatcatcactcaaagagataacaatacaaagagcaaaaaaggggggaaaattggaacactaatagcacttcaattggattactaccatg |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42850173 |
taaacaacccacatcatcgctcaaagagataacaatacaaagagcaaaacaggggggaaaattggaacactaatagcacttcaattggattactaccatg |
42850272 |
T |
|
| Q |
117 |
aattagtgatcacacatgacataagaatcactatttataataagccctctcacaagaagactgaacccattgtc-aaaaaacctatcacaaacaaataac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42850273 |
aattagtgatcacacatgacataagaatcactatttataataagccctttcacaagaagactgaacccattgtcaaaaaaacctatcacaaacaaataac |
42850372 |
T |
|
| Q |
216 |
accaaacacatataattccacaagactagcacaaacatcgacaagttgttatgcgaatctgtgaatcaaccattgtgtgtcgcttctacttgtgagtatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42850373 |
accaaacacatataattccacaagactagcacaaacatcgacaagttgttatgcgaatctgtgaatcaaccattgtgtgtcgcttctacttgtgagtatt |
42850472 |
T |
|
| Q |
316 |
atc |
318 |
Q |
| |
|
||| |
|
|
| T |
42850473 |
atc |
42850475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 30941743 - 30941513
Alignment:
| Q |
21 |
caacccacatcatcactcaaagagataacaatacaaagagcaaaaaaggggggaaaattggaacactaatagcacttcaattggattactaccatgaatt |
120 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||||||| ||||||||||||| ||| ||||||||| ||||||||| ||||||||||| ||||| ||| | |
|
|
| T |
30941743 |
caacccatgtcatcagtcaaagagataaccatacaaatagcaaaaaagggga-aaatttggaacaccaatagcactgcaattggattaataccacgaagt |
30941645 |
T |
|
| Q |
121 |
agtgatcacacatgacat-aagaatcactatttataataagccctctcacaagaagactgaacccattgtcaaaaaacctatcacaaacaaataacacca |
219 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||| ||| | | ||| ||||| |||||||||||||| |||| |||||||||||||||| |||||||||| |
|
|
| T |
30941644 |
agtgatcactcatgacataaagagtcactatttgtaaaatgtcctttcacaggaagactgaacccaatgtc--aaaacctatcacaaaccaataacacca |
30941547 |
T |
|
| Q |
220 |
aacacatataattccacaagactagcacaaacat |
253 |
Q |
| |
|
||||| ||||||||| | ||||||||| |||||| |
|
|
| T |
30941546 |
aacacctataattccgccagactagcaaaaacat |
30941513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 30941156 - 30941120
Alignment:
| Q |
282 |
caaccattgtgtgtcgcttctacttgtgagtattatc |
318 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30941156 |
caaccattgtatgtcgcttctacttgtgagtattatc |
30941120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University