View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16845_high_4 (Length: 387)
Name: NF16845_high_4
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16845_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 41128855 - 41129219
Alignment:
| Q |
15 |
ataactttcatcttcaccgcaaacagaaggggcaggggaagcttcgggtgtgttggtagtgagagtgctagcaggtgaaggaaatgaatcttcgtcttcg |
114 |
Q |
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| T |
41128855 |
ataactttcatcttcaccgcaaacggaaggggcaggggaagcttcaggtgtgttggtagtgagagtgctagcaggtgaaggaaatgaatcttcgtcttcg |
41128954 |
T |
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| Q |
115 |
gtctgttgttggagactccaatacattatactggctgcaagagtcagaatcatcttctgattaacctgtcataaagttcaacaaaaaattaacacagcag |
214 |
Q |
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| T |
41128955 |
gtctgttgttggagactccaatacattatactggctgcaagagtcagaatcatcttctgattaacctgtcataa-gttcaacaaaaaattaacacagcag |
41129053 |
T |
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| Q |
215 |
cgataatgttatgctagattatgtgtataaagttgtgtgcgaaatatgaatgaatctcactgatggtggaaactatacctccataatatcctcaggtaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129054 |
cgataatgttatgctagattatgtgtataaagttgtgtgcgaaatatgaatgaatctcactgatggtggaaactatacctccataatatcctcaggtaac |
41129153 |
T |
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| Q |
315 |
aaatatatggaacaaccaagctttcgtgcgacactgattatgtaagtggcattcaacttcttctca |
380 |
Q |
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| T |
41129154 |
agatatatggaacaaccaagctttcgtgcgacactgattatgtaagtggcgttcaacttcttctca |
41129219 |
T |
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