View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16845_low_1 (Length: 602)
Name: NF16845_low_1
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16845_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 217 - 586
Target Start/End: Complemental strand, 41196684 - 41196316
Alignment:
| Q |
217 |
ccttcattttttaggtaagaacaccatcatagtctgacaattttattggctcttctcatagactcactagtcactaccataatgaaacattcttttgtgt |
316 |
Q |
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| T |
41196684 |
ccttcattttttaggtaagaacaccatcatagtctgacaattttattggctcttctcatagactcactagtcactaccatgatgaaacattcttttgtgt |
41196585 |
T |
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| Q |
317 |
ccaccgtggtgtccctgcatggctctttagacatatttccaatatgttctcttatgtctcaataataacttcttgcttgtctttagcttaaggctgaact |
416 |
Q |
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| T |
41196584 |
ccaccgtggtgtccctgcatggctctttagacatatttccaatatgttctcttatgtctgaataataaattcttgcttgtctttagcttaaggctgaact |
41196485 |
T |
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| Q |
417 |
tttgatatgttttgttatgttcccttttctcttcattgcttggacaacaaatgtataatacatcatcattatatccgagt--cttgtgcaatagcagtag |
514 |
Q |
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| T |
41196484 |
tttgatatgttttgttatgttcccttttctcttcattgcttggacaacaaatgtataatacatcat---tatatctgattatcttgtgcaatagcagtgg |
41196388 |
T |
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| Q |
515 |
aggatccaaattcgttgagaagctaaattcgtaatcaacgataactaataatgttaactaacttgcaatttt |
586 |
Q |
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| T |
41196387 |
aggatccaaattcgttgagaagctaaattcttaaacaacgataactaataatgttaactaacttgcaatttt |
41196316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 41196900 - 41196708
Alignment:
| Q |
15 |
gggaataactctgaccaaaatcataatggagaaccatagtacattggaaggaagagtgagagtaaagccacatttttcatacggaaaataatgctatatc |
114 |
Q |
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| T |
41196900 |
gggaataactctgaccaaaatcataatggagaaccatagtacattggaaggaagagtgagagtaaagccacatttttcatacggaaagtaatgctatatc |
41196801 |
T |
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| Q |
115 |
acacattattattgagtttttatagaaaaagaaaatgtaatnnnnnnnngtgactgaatttgaagaaaagaattagtgagaatataagaactc |
207 |
Q |
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| T |
41196800 |
acacattattattgagtttttatagaaaaagaaaatgtaataaaaaaaagtgactgaatttgaagaaaagaattaatgagaatataagaactc |
41196708 |
T |
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