View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16845_low_10 (Length: 323)
Name: NF16845_low_10
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16845_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 14901526 - 14901812
Alignment:
| Q |
15 |
aataccatagtaataagaggcctagccatcctaaagcagcacagattgctaggaagttgagaataaagattaagaacccttgatactttgttcaaatgat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14901526 |
aataccatagtaataagaggcctagccatcctaaagcagcacagattgctcggaagttgagaataaagattaagaacccttgatacgttgttcaaatgat |
14901625 |
T |
|
| Q |
115 |
gaactctttttaagttgagtgtgtattgtgtttggaataacagttgtgagaaatcaatcatagtaaatgtcattagcttaaatgtcacgagccactttga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14901626 |
-------ttttaagttgagtgtgtattgtgtttggaataacagttgtgagaaatcaatcatagtaaatgtcattagcttaaatgtcacgagccactttga |
14901718 |
T |
|
| Q |
215 |
gttttttatagttgattttatttgtattattcaactc--atgtattatttggttagaattgaactaatatcagtcatattcatattcattgttt |
306 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14901719 |
gtttttcatagttgattttatttgtattattcaactcaaatgtattatttggttaggattgaactaatatcagtgatattcatattcattgttt |
14901812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 14908289 - 14908442
Alignment:
| Q |
15 |
aataccatagtaataagaggcctagccatcctaaagcagcacagattgctaggaagttgagaataaagattaagaacccttgatactttgttcaa---at |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
14908289 |
aataccatagtaataaaaggcctagccatcctaaagcagcacagattgctcggaagttaagaataaaggttaagaacccttgatactttgttcaaacgat |
14908388 |
T |
|
| Q |
112 |
gatgaactctttttaagttgagtgtgtattgtgtttggaataacagttgtgaga |
165 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14908389 |
gatgaactattttcaacttgagtgtgtattgtgtttggaataatagttgtgaga |
14908442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 14912933 - 14913014
Alignment:
| Q |
172 |
tcatagtaaatgtcattagcttaaatgtcacgagccactttgagttttttatagttgattttatttgtattattcaactcat |
253 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
14912933 |
tcatagtaaatgtcagtagcttgaatgtcacgagccactttgagttttttatagttgatttcatttgaattattcaattcat |
14913014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University