View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16845_low_11 (Length: 290)

Name: NF16845_low_11
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16845_low_11
NF16845_low_11
[»] chr1 (10 HSPs)
chr1 (5-270)||(39997630-39997895)
chr1 (9-245)||(11075604-11075840)
chr1 (5-265)||(16824233-16824492)
chr1 (8-256)||(2887301-2887549)
chr1 (21-256)||(8266495-8266730)
chr1 (21-179)||(9427547-9427704)
chr1 (5-163)||(18565694-18565852)
chr1 (28-248)||(3621033-3621251)
chr1 (13-198)||(26479372-26479557)
chr1 (172-245)||(15258670-15258743)
[»] chr7 (4 HSPs)
chr7 (11-256)||(5464695-5464940)
chr7 (5-265)||(25828526-25828786)
chr7 (5-160)||(10329101-10329256)
chr7 (124-203)||(28717758-28717837)
[»] chr4 (8 HSPs)
chr4 (1-265)||(47924397-47924661)
chr4 (6-265)||(54259109-54259367)
chr4 (5-256)||(40656275-40656526)
chr4 (11-195)||(41940682-41940866)
chr4 (5-234)||(50945720-50945952)
chr4 (50-245)||(25969262-25969457)
chr4 (22-241)||(24015791-24016009)
chr4 (5-72)||(27184901-27184968)
[»] scaffold0013 (1 HSPs)
scaffold0013 (5-249)||(54890-55134)
[»] chr2 (7 HSPs)
chr2 (5-254)||(4653429-4653679)
chr2 (6-245)||(8271254-8271494)
chr2 (5-265)||(6571158-6571418)
chr2 (21-267)||(44440158-44440404)
chr2 (5-247)||(37192761-37193004)
chr2 (1-115)||(45036178-45036292)
chr2 (174-256)||(5964399-5964481)
[»] chr8 (8 HSPs)
chr8 (5-265)||(12563018-12563277)
chr8 (1-265)||(15243217-15243481)
chr8 (9-256)||(1758749-1758986)
chr8 (7-196)||(28932356-28932545)
chr8 (34-265)||(23589677-23589908)
chr8 (34-213)||(23810334-23810513)
chr8 (5-184)||(12607758-12607934)
chr8 (12-198)||(45260900-45261087)
[»] chr6 (5 HSPs)
chr6 (5-256)||(29046995-29047243)
chr6 (75-265)||(2442196-2442386)
chr6 (13-113)||(10993004-10993104)
chr6 (8-110)||(6861922-6862024)
chr6 (5-72)||(2443242-2443309)
[»] chr3 (5 HSPs)
chr3 (12-265)||(53590188-53590441)
chr3 (11-256)||(43445211-43445458)
chr3 (11-215)||(7320309-7320512)
chr3 (8-126)||(50425848-50425966)
chr3 (5-98)||(17508619-17508712)
[»] chr5 (2 HSPs)
chr5 (11-265)||(12292074-12292328)
chr5 (13-74)||(12291927-12291988)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 270
Target Start/End: Original strand, 39997630 - 39997895
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagc 104  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39997630 gaccagcaataatcaggtcaactgctttcaaacaatcactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagc 39997729  T
105 acgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaa 204  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
39997730 acgtcactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctgcatcgtggttgcgaacaacaccaccaacatctaaa 39997829  T
205 caaccaaaatcttgtagaaaactaccatcaatattgagtttaagtataccttatggaggggtaatc 270  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
39997830 caactaaaatcttgtagaaagctaccatcaatattgagtttaagtataccttatggaggggtaatc 39997895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 11075840 - 11075604
Alignment:
9 agcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgt 108  Q
    ||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |||| ||||||| ||||||||||||||||||| ||||||||||||||    
11075840 agcaataatcaagtcaactgcttccaaacaatcactctcacaaataatgttgacatagcctttttaactacaaaaatcaagacctatctggatagcacgt 11075741  T
109 aactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaac 208  Q
    ||||||||| ||||| ||||||||||| |||  ||||| |||||||||| ||||  ||||| |||||||||||||| |||||||||| || |||||||||    
11075740 aactcagctaataacgcatcacctccagcttcatagtgggaaaaaccagttatctaatctctatcgtggttgcgaacaacaccaccagcacctaaacaac 11075641  T
209 caaaatcttgtagaaaactaccatcaatattgagttt 245  Q
    ||||||||| |||||| ||||||||||||||||||||    
11075640 caaaatcttctagaaagctaccatcaatattgagttt 11075604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 16824233 - 16824492
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagc 104  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||| | || ||||| |    
16824233 gaccagcaataatcaggtcaactgcttccaaacaac-actctcacaaataatgttgacataaccttttttactataaaaatcaagacatatcaggataac 16824331  T
105 acgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaa 204  Q
    ||||||||||||| ||||| ||||||||||  |||  |||||||||||| ||| ||||| |||||||| ||||||||||| ||||||| || || |||||    
16824332 acgtaactcagctaataacgcatcacctcccgcttcatagtgagaaaaatcagttatccaatctccattgtggttgcgaacaacaccatcagcacctaaa 16824431  T
205 caaccaaaatcttgtagaaaactaccatcaatattgagtttaagtataccttatggagggg 265  Q
    ||||||| ||||| |||||| |||||||||||||||||||| ||| |||||| ||||||||    
16824432 caaccaagatcttctagaaagctaccatcaatattgagtttcagtgtaccttctggagggg 16824492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 2887549 - 2887301
Alignment:
8 cagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacg 107  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||  |||||| ||||||||||||||||||| | |||||| ||||    
2887549 cagcaataatcaggtcaactgcttccaaacaaccactctcgcaaataatgttgacatagtctttttcactacaaaaatcaagacctatttggatatcacg 2887450  T
108 taactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaa 207  Q
    |||| ||||| ||||| ||||||||||| | |  |||||||||||||||||||| | ||||| |||||||||||||| |||||||||| || ||||||||    
2887449 taacgcagctaataacgcatcacctccagcatcatagtgagaaaaaccagctattcaatctctatcgtggttgcgaacaacaccaccagcacctaaacaa 2887350  T
208 ccaaaatcttgtagaaaactaccatcaatattgagtttaagtatacctt 256  Q
    |||||||||| || ||| |||||||||||||||||||| |||| |||||    
2887349 ccaaaatcttctaaaaagctaccatcaatattgagtttgagtaaacctt 2887301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 8266730 - 8266495
Alignment:
21 gtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgat 120  Q
    ||||||||||||||||||| || ||||| |||||||||||||||| ||||||  ||||||||||||||||||| ||||||||| ||||||||||||| ||    
8266730 gtcaactgcttccaaacaatcattctcacaaataatgttggcatagccttttagactacaaaaatcaagacctatctggatagtacgtaactcagctaat 8266631  T
121 aacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttgta 220  Q
    ||  || ||||||||||||  ||||||||||||| || ||||  |||||| ||||||||||| | |||||||||| || ||||| |||||||||||| ||    
8266630 aatgcaccacctccaacttcatagtgagaaaaactagttatcgaatctccgtcgtggttgcgcacaacaccaccagcacctaaataaccaaaatcttcta 8266531  T
221 gaaaactaccatcaatattgagtttaagtatacctt 256  Q
     ||| |||||||||||||||||||||||| ||||||    
8266530 aaaagctaccatcaatattgagtttaagtgtacctt 8266495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 9427704 - 9427547
Alignment:
21 gtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgat 120  Q
    ||||||||  ||||||||| |||||||| |||||||||||||||| | ||||  ||||||||||||||||||| |||| |||||||| ||||||||| ||    
9427704 gtcaactgaatccaaacaatcactctcacaaataatgttggcatagcattttagactacaaaaatcaagacctatctgaatagcacggaactcagctaat 9427605  T
121 aacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggtt 179  Q
    ||| |||||||| ||||||  |||||||||||| ||| ||| | |||||||||||||||    
9427604 aacgcatcacct-caacttcatagtgagaaaaatcagttattcaatctccatcgtggtt 9427547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 18565852 - 18565694
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagc 104  Q
    ||||| ||||||||||||||||| ||| ||||||| |||||||| |||||||||||  |||  |||||  |||||||||||| ||||   ||||||||||    
18565852 gaccatcaataatcaggtcaactactttcaaacaatcactctcacaaataatgttgagatagtcttttggactacaaaaatcgagactaatctggatagc 18565753  T
105 acgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatcc 163  Q
    ||||||||||||| ||||||||||||||||| |||  |||||| ||||| |||||||||    
18565752 acgtaactcagctaataacacatcacctccagcttcatagtgaaaaaaatcagctatcc 18565694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 3621033 - 3621251
Alignment:
28 gcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacat 127  Q
    |||||||| |||||||||||| |||||||||||  ||| ||||| || | ||||||||||||| |  |||| |||||||| ||||||||  |  ||||||    
3621033 gcttccaagcaaccactctcacaaataatgttgttatagcctttgttgcgacaaaaatcaagatccatctgaatagcacgcaactcagccaa--acacat 3621130  T
128 cacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttgtagaaaact 227  Q
    ||||| |||||||  ||  ||||||||||||||||| |||||||||||||||| ||| | ||||||||||| | || || |||||  ||| || ||||||    
3621131 caccttcaactttaaagcaagaaaaaccagctatccaatctccatcgtggttgggaacaccaccaccaacaccaaagcacccaaagccttctaaaaaact 3621230  T
228 accatcaatattgagtttaag 248  Q
    |||||||| || |||||||||    
3621231 accatcaacatcgagtttaag 3621251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 26479557 - 26479372
Alignment:
13 ataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaact 112  Q
    |||||||| ||||||| |||||||||| |||||||| ||||||| ||| |||| | ||| || | |||||||||||||| | | |  |||||||| | ||    
26479557 ataatcagctcaactgattccaaacaatcactctcacaaataatattgtcatagcatttcttgcaacaaaaatcaagacatatataaatagcacgcagct 26479458  T
113 cagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaaca 198  Q
    ||||| ||| | |||||||||||||||  ||||| |||||||||||||||  ||||||||  |||||| ||| |||||||||||||    
26479457 cagctaatagcgcatcacctccaacttcatagtgcgaaaaaccagctatcaaatctccataatggttgtgaacaacaccaccaaca 26479372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 15258743 - 15258670
Alignment:
172 tcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttgtagaaaactaccatcaatattgagttt 245  Q
    |||||||| |||| || |||||||||| ||||  | |||||  ||||||||||||||||||||| |||||||||    
15258743 tcgtggttacgaacaataccaccaacacctaagaacccaaagccttgtagaaaactaccatcaacattgagttt 15258670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 5464695 - 5464940
Alignment:
11 caataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaa 110  Q
    ||||||| |||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||| || ||||||||| ||||||    
5464695 caataataaggtcaactgcttccaaacaaccactctaacaaataatgttgacataatcttttttactacaaaaatcaagaactatctggatagtacgtaa 5464794  T
111 ctcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaacca 210  Q
    ||||||| |||||||||||||||||||||  ||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||||||||    
5464795 ctcagctaataacacatcacctccaacttcatagtgagcaaaacctgctatccaatctccatcgtggttgcgaacaacaccaccaacacctaaacaacca 5464894  T
211 aaatcttgtagaaaactaccatcaatattgagtttaagtatacctt 256  Q
    ||||||| |||||| ||||||||| |||||||||| ||| ||||||    
5464895 aaatcttctagaaagctaccatcactattgagtttgagtgtacctt 5464940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 25828526 - 25828786
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagc 104  Q
    ||||| ||| ||||||||||||||||| ||||||| |||||||| | ||||||||| |||| ||||||||||||||||||||||||||| | ||||||||    
25828526 gaccaacaacaatcaggtcaactgctttcaaacaatcactctcacatataatgttgacatagccttttttactacaaaaatcaagacctatatggatagc 25828625  T
105 acgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaa 204  Q
    |||||| |||||| ||||| |||||| ||||||||  ||| |||||||||||| ||||| ||||||||| |||||||||| ||||||||||| | |||||    
25828626 acgtaattcagctaataacgcatcacttccaacttcatagcgagaaaaaccagttatccaatctccatcatggttgcgaacaacaccaccaatacctaaa 25828725  T
205 caaccaaaatcttgtagaaaactaccatcaatattgagtttaagtataccttatggagggg 265  Q
    |||||||| |||| || ||| |||||||||||||||||||||||| ||||||  |||||||    
25828726 caaccaaagtcttctaaaaagctaccatcaatattgagtttaagtgtaccttccggagggg 25828786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 10329101 - 10329256
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagc 104  Q
    ||||| ||||||||||||||||| ||||| ||||| |||||||| ||| ||||||| |||| |||||||||||| |||||| ||||||| | |  |||||    
10329101 gaccatcaataatcaggtcaactccttcctaacaatcactctcacaaaaaatgttgacatagccttttttactataaaaattaagacctatttacatagc 10329200  T
105 acgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagcta 160  Q
    ||||||||| | | |||| ||||||||||||| ||| |||||||| ||||| ||||    
10329201 acgtaactccgttaataatacatcacctccaattttatagtgagagaaacctgcta 10329256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 28717758 - 28717837
Alignment:
124 acatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaa 203  Q
    ||||||||||||| |||| ||||||||||| |||||| || |||  |||  || |||| |||||||||||||||| ||||    
28717758 acatcacctccaattttgcagtgagaaaaatcagctacccaatcatcataatgtttgcaaataacaccaccaacacctaa 28717837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 47924397 - 47924661
Alignment:
1 tcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctgga 100  Q
    |||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||| || |||    
47924397 tcatgatcatcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttgacttaaccttttttactacaaaaatcaagacctatccgga 47924496  T
101 tagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatc 200  Q
    |||||||||| |||||| ||||  |||||||||||||||  ||||| ||||||||||| |||| |||||||| || | | |||| |||||| |||||| |    
47924497 tagcacgtaattcagctaataatgcatcacctccaacttcatagtgtgaaaaaccagcaatccaatctccattgtcgctacgaacaacaccgccaacacc 47924596  T
201 taaacaaccaaaatcttgtagaaaactaccatcaatattgagtttaagtataccttatggagggg 265  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||||| |||||| | ||||||    
47924597 taaacaaccaaaatcttctagaaagctgccatcaatattgagtttaagtgtaccttctagagggg 47924661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 54259367 - 54259109
Alignment:
6 accagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagca 105  Q
    ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||| |||| ||||||  |||||||||||||| |||||||||||    
54259367 accagcaataaacaggtcaactgcttccaaacaatcactctcacaaataatgttgacatagccttatttactgtaaaaatcaagacctatctggatagca 54259268  T
106 cgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaac 205  Q
    |||||||||||| | ||| ||||||||||| | |  ||||||||||||||||||||||  ||||||  ||||||||||| || ||||||| || ||||||    
54259267 cgtaactcagctaacaacccatcacctccagc-tcatagtgagaaaaaccagctatccattctccaatgtggttgcgaacaataccaccatcacctaaac 54259169  T
206 aaccaaaatcttgtagaaaactaccatcaatattgagtttaagtataccttatggagggg 265  Q
    ||||| | |||| | |||| ||||||||||||||||| || ||| ||||||  |||||||    
54259168 aaccagagtcttctggaaagctaccatcaatattgagcttgagtgtaccttccggagggg 54259109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 40656275 - 40656526
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttgg-cataaccttttttactacaaaaatcaagacctgtctggatag 103  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| | | |||| |||| |||||||||||||||||| | | ||||||     
40656275 gaccagcaataatcaggtcaactgctttcaaacaatcactctcacaaataatgtttgacgtaacattttctactacaaaaatcaagacatatatggataa 40656374  T
104 cacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaa 203  Q
    ||||| |||||||| ||||| |||||| || |||||   |||| |||||||||| ||| | ||||| || ||||||||||| |||||||| | || ||||    
40656375 cacgttactcagctaataacgcatcacttctaacttcacagtg-gaaaaaccagttattcaatctctattgtggttgcgaacaacaccacgagcacctaa 40656473  T
204 acaaccaaaatcttgtagaaaactaccatcaatattgagtttaagtatacctt 256  Q
    |||||||||||||| ||||||  ||||||||||||||||||| ||| ||||||    
40656474 acaaccaaaatcttctagaaagttaccatcaatattgagtttgagtgtacctt 40656526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 41940682 - 41940866
Alignment:
11 caataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaa 110  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||||||||| |||| ||||||  | ||||||||||||||||| |   ||||||||||||    
41940682 caataatcaggtcaactgctttcaaacaatcactctcacaaataatgttgacatagccttttaaattacaaaaatcaagacctattctgatagcacgtaa 41940781  T
111 ctcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccacca 195  Q
    ||||||| ||||| ||||||||||| |||  |||||||||||||||||||||| |||||||||||||||||||| | ||||||||    
41940782 ctcagctaataacgcatcacctccagcttcatagtgagaaaaaccagctatccaatctccatcgtggttgcgaacaccaccacca 41940866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 50945952 - 50945720
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacc---ttttttactacaaaaatcaagacctgtctggat 101  Q
    ||||| |||||||||||||||  | |||||||||| |||| ||| ||||||||||| ||||  |   ||||||||||||||||||||||||| |||||||    
50945952 gaccaacaataatcaggtcaatcggttccaaacaatcactttcacaaataatgttgacatagtccttttttttactacaaaaatcaagacctatctggat 50945853  T
102 agcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatct 201  Q
    ||| |||||||||||| ||||| |||||||| || |||  |||||||||||| ||||||||| ||||||||| |||||| ||| ||||||||||||| ||    
50945852 agcgcgtaactcagctaataacgcatcaccttcagcttcatagtgagaaaaatcagctatccaatctccatcatggttgtgaacaacaccaccaacacct 50945753  T
202 aaacaaccaaaatcttgtagaaaactaccatca 234  Q
    ||||||||||| | || || ||| |||||||||    
50945752 aaacaaccaaactattctaaaaagctaccatca 50945720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 50 - 245
Target Start/End: Complemental strand, 25969457 - 25969262
Alignment:
50 aaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgaga 149  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||||| || ||| |||||  | || | |||  ||||||||    
25969457 aaataatgttgacataacctcttttactacaaaaatcaagacctatctggatagtacgtaactcaactaatagcacatggcttcgagcttcatagtgaga 25969358  T
150 aaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttgtagaaaactaccatcaatattgagttt 245  Q
    ||||||| |||||| |||||||||||| ||||||| ||||||| || || |||||||||||||||||| |||||| ||||||| ||||| ||||||    
25969357 aaaaccaactatccaatctccatcgtgattgcgaacaacaccatcaccacctaaacaaccaaaatcttctagaaagctaccattaatatcgagttt 25969262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 24016009 - 24015791
Alignment:
22 tcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgata 121  Q
    ||||||||||||||| || |||||||| |||||||||||  |||| || | |||| ||||||||||||||   | |  ||| |||| |||||| |  | |    
24016009 tcaactgcttccaaagaatcactctcacaaataatgttgttataa-ctctattacaacaaaaatcaagacacatttcaataacacgcaactcaaccaaca 24015911  T
122 acacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttgtag 221  Q
    |  |||||||||||||||  ||   ||||||  | ||||| | |||||||||||||||||||| ||| ||||||||| |||| || || ||  ||| ||     
24015910 atgcatcacctccaacttcatatgaagaaaagtcggctattcaatctccatcgtggttgcgaacaaccccaccaacacctaagcacccgaagccttctat 24015811  T
222 aaaactaccatcaatattga 241  Q
    |||| ||||||||| |||||    
24015810 aaaattaccatcaacattga 24015791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 27184901 - 27184968
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctttt 72  Q
    ||||| ||||||||| ||||||||||||||||||| || ||||| ||||||||||  |||| ||||||    
27184901 gaccatcaataatcaagtcaactgcttccaaacaatcattctcacaaataatgttcacatagcctttt 27184968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 54890 - 55134
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagc 104  Q
    ||||| |||||||||||||| || ||||||||||| |||||||| ||||||||||  |||| |||||   ||||||||||||||||||| |||| ||| |    
54890 gaccatcaataatcaggtcacctacttccaaacaatcactctcacaaataatgttcacatagcctttcagactacaaaaatcaagacctatctgaataac 54989  T
105 acgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaa 204  Q
    ||||||||||||| |||||| |||||||||| |||  |||||||||||||||||||||| |||||||||||| |||| || ||||||||||||| |||||    
54990 acgtaactcagctaataacaaatcacctccagcttcatagtgagaaaaaccagctatccaatctccatcgtgattgcaaacaacaccaccaacacctaaa 55089  T
205 caaccaaaatcttgtagaaaactaccatcaatattgagtttaagt 249  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||    
55090 caacccaaatcttctagaaaactaccatcaatattgagtttaagt 55134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 9e-73; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 5 - 254
Target Start/End: Complemental strand, 4653679 - 4653429
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctttt-ttactacaaaaatcaagacctgtctggatag 103  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||  |||| |||||| ||||||||||||||||||||| |||||||||    
4653679 gaccatcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttaacatagccttttattactacaaaaatcaagacctatctggatag 4653580  T
104 cacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaa 203  Q
    ||||||||||| ||  |||| ||||||||||| |||  | |||||||||| ||||||||| |||||||||||||||||||| |||||||||| || ||||    
4653579 cacgtaactcacctagtaacgcatcacctccagcttcatggtgagaaaaatcagctatccaatctccatcgtggttgcgaacaacaccaccagcacctaa 4653480  T
204 acaaccaaaatcttgtagaaaactaccatcaatattgagtttaagtatacc 254  Q
    |||||||||||||| |||  | |||||||||||||||||||| ||| ||||    
4653479 acaaccaaaatcttctaggtagctaccatcaatattgagtttgagtgtacc 4653429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 8271254 - 8271494
Alignment:
6 accagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaa-atcaagacctgtctggatagc 104  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| | |||||||| |||||||||| | |||||| |    
8271254 accagcagtaatcaggtcaactgcttccaaacaatcactctcacaaataatgttgacataaccttttcttctacaaaaaatcaagacctatttggataac 8271353  T
105 acgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaa 204  Q
     |||||||||||| ||||| |||||||||||||||  || ||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||||     
8271354 gcgtaactcagctaataacgcatcacctccaacttcataatgagaaaaaccagctatccaatctccatcgtggttgcgaacaacaccaccagcacctaag 8271453  T
205 caaccaaaatcttgtagaaaactaccatcaatattgagttt 245  Q
    ||||||||| ||| |||||| ||| ||||||||||||||||    
8271454 caaccaaaaccttctagaaagctatcatcaatattgagttt 8271494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 6571158 - 6571418
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagc 104  Q
    |||||||||||||||||||||||| |||| ||||| ||| |||| ||||||||||| |||| |||||| ||||| |||||||||||||| | ||||||||    
6571158 gaccagcaataatcaggtcaactgtttccgaacaatcaccctcacaaataatgttgacatagccttttctactataaaaatcaagacctatttggatagc 6571257  T
105 acgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaa 204  Q
    || |||||||||| | ||| ||||||||||| |||  |||||||||||| |||| | || |||||||||||||||||||| |||||||||| |  |||||    
6571258 acataactcagctaacaacgcatcacctccagcttcatagtgagaaaaatcagccacccaatctccatcgtggttgcgaacaacaccaccatctcctaaa 6571357  T
205 caaccaaaatcttgtagaaaactaccatcaatattgagtttaagtataccttatggagggg 265  Q
    | |||||| |||| |||||| ||||||||||||||||| || ||| ||||||  |||||||    
6571358 ctaccaaagtcttctagaaagctaccatcaatattgagcttgagtgtaccttccggagggg 6571418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 267
Target Start/End: Complemental strand, 44440404 - 44440158
Alignment:
21 gtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgat 120  Q
    |||| |||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||| | |||| ||| ||| |||||| ||| ||    
44440404 gtcatctgcttccaaacaatcactctcacaaataatgttgacatagccttttttactacaaaaatcaagacatatctgaataacacataactctgctaat 44440305  T
121 aacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttgta 220  Q
    |||  ||||| | ||||||  ||||||||||||||||||| |  |||||||||||||||||||| ||| |||||| || |||||||| ||||||||| ||    
44440304 aacgtatcacatacaacttcatagtgagaaaaaccagctacctaatctccatcgtggttgcgaacaacgccaccatcacctaaacaatcaaaatcttcta 44440205  T
221 gaaaactaccatcaatattgagtttaagtataccttatggaggggta 267  Q
    |||| ||||||||||||| |||||| ||| ||||||  |||||||||    
44440204 gaaagctaccatcaatatcgagtttgagtctacctttcggaggggta 44440158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 37193004 - 37192761
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataa-ccttttttactacaaaaatcaagacctgtctggatag 103  Q
    ||||| |||||||||||| ||||| |||||||||| |||| ||| ||||||||||| || || ||||||  |||||||||||||| || | ||||||||     
37193004 gaccatcaataatcaggttaactgtttccaaacaatcactttcaaaaataatgttgacacaaaccttttagactacaaaaatcaaaacttatctggatat 37192905  T
104 cacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaa 203  Q
    |||||||||||| | |||||  ||||||||||| ||  ||||||||||||  || ||||| ||| |||||||||||||||| ||||||||||||| ||||    
37192904 cacgtaactcagttaataacgtatcacctccaatttcatagtgagaaaaattagttatccaatcaccatcgtggttgcgaacaacaccaccaacacctaa 37192805  T
204 acaaccaaaatcttgtagaaaactaccatcaatattgagtttaa 247  Q
    |||||  |||||||  |||||||||||||||| ||||| |||||    
37192804 acaactcaaatcttccagaaaactaccatcaacattgaatttaa 37192761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 45036178 - 45036292
Alignment:
1 tcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctgga 100  Q
    |||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||  |||||    
45036178 tcatcaccatcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttgacataaccttttttactacaaaaatcaagacctacctgga 45036277  T
101 tagcacgtaactcag 115  Q
    |||||||||||||||    
45036278 tagcacgtaactcag 45036292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 5964399 - 5964481
Alignment:
174 gtggttgcgaataacaccaccaacatctaaacaaccaaaatcttgtagaaaactaccatcaatattgagtttaagtatacctt 256  Q
    |||| |||||| |||||||||||||||||| || ||| |||||| |||||| ||||||| ||||||| |||| ||| ||||||    
5964399 gtggatgcgaacaacaccaccaacatctaagcagccacaatcttctagaaagctaccattaatattgtgtttgagtgtacctt 5964481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 5 - 265
Target Start/End: Complemental strand, 12563277 - 12563018
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagc 104  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||  ||  ||||||||||||||||||||||||||| ||||||||||    
12563277 gaccaacaataatcaggtcaactacttccaaacaatcactctcacaaataatgttgatatggccttttttactacaaaaatcaagacctatctggatagc 12563178  T
105 acgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaa 204  Q
    |||||| | || | ||||| ||||||||||| |||  ||||||| |||||||||||||| ||||||||||||||||| || | ||| |||| || |||||    
12563177 acgtaaattagataataacgcatcacctccagcttcatagtgag-aaaaccagctatccaatctccatcgtggttgcaaacagcactaccatcacctaaa 12563079  T
205 caaccaaaatcttgtagaaaactaccatcaatattgagtttaagtataccttatggagggg 265  Q
    |||| |||||||| |||||| |||||||||||||||||||| ||| ||||||  |||||||    
12563078 caacaaaaatcttctagaaatctaccatcaatattgagtttgagtgtaccttcgggagggg 12563018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 15243481 - 15243217
Alignment:
1 tcatgaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctgga 100  Q
    ||||||||| ||||||||||||||||| |||| |||||| |||||| | ||||||||||| ||||||||||| |||||||||||| ||||| | ||  ||    
15243481 tcatgaccatcaataatcaggtcaactacttcaaaacaatcactcttacaaataatgttgacataaccttttctactacaaaaattaagacatatcaaga 15243382  T
101 tagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatc 200  Q
    ||||||||||||| ||| ||||| |||||||| ||||||  ||||| |||||||||| ||||| |||||||||||||||| ||| |||||| |||||| |    
15243381 tagcacgtaactcggctaataacgcatcaccttcaacttcatagtgcgaaaaaccagttatccaatctccatcgtggttgagaacaacacctccaacacc 15243282  T
201 taaacaaccaaaatcttgtagaaaactaccatcaatattgagtttaagtataccttatggagggg 265  Q
    |||||||||||||| || || ||| || ||||||||||||||||| ||| |||||| ||||||||    
15243281 taaacaaccaaaattttttaaaaagctgccatcaatattgagtttgagtgtaccttctggagggg 15243217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 256
Target Start/End: Original strand, 1758749 - 1758986
Alignment:
9 agcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgt 108  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||||||||||| || ||||||||| ||||||||| |||||||||           | ||    
1758749 agcaataatcaggtcaattgcttccaaacaatcactctcacaaataatgttgacacaacctttttcactacaaaattcaagaccta----------aagt 1758838  T
109 aactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaac 208  Q
    ||||||||| ||||| |||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||| || |||| || || |||||||||    
1758839 aactcagctaataacgcatcacctccaacttcatagtgagaaaaaccagctatccaatctccatcgtggttgcgaacaataccatcagcacctaaacaac 1758938  T
209 caaaatcttgtagaaaactaccatcaatattgagtttaagtatacctt 256  Q
    ||||| ||| |||||| |||||||||||||||||||| ||| ||||||    
1758939 caaaaccttctagaaagctaccatcaatattgagtttgagtgtacctt 1758986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 28932356 - 28932545
Alignment:
7 ccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcac 106  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||| |||||||||| |||||||| ||| ||||||||    
28932356 ccagcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttgacataacatttttcactacaaaaaccaagacctatcttgatagcac 28932455  T
107 gtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaa 196  Q
    ||||||||||| ||||| ||||| || || |||  ||||||||||||||| |||||| ||||||||||||||| |||| |||| ||||||    
28932456 gtaactcagctaataacgcatcagcttcagcttcatagtgagaaaaaccaactatccaatctccatcgtggttacgaacaacaacaccaa 28932545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 265
Target Start/End: Complemental strand, 23589908 - 23589677
Alignment:
34 aaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctc 133  Q
    |||||| |||||| | ||||||||||| |||||||||| ||||||||||||| |||  || ||||||||||||||||||||||| ||||| |||||||||    
23589908 aaacaatcactctgacaaataatgttgacataacctttgttactacaaaaataaagttctatctggatagcacgtaactcagctaataacgcatcacctc 23589809  T
134 caactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaatcttgtagaaaactaccatc 233  Q
    ||||||  ||||| |||||  ||| ||||| ||||| ||||| ||| |||| |||||||||| || |||||||||||||||||| |||||| || |||||    
23589808 caacttcatagtgggaaaactcagttatccaatctctatcgtagttacgaacaacaccaccagcacctaaacaaccaaaatcttctagaaagctgccatc 23589709  T
234 aatattgagtttaagtataccttatggagggg 265  Q
    |||||||||||| ||| |||||| || |||||    
23589708 aatattgagtttgagtgtaccttctgaagggg 23589677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 34 - 213
Target Start/End: Complemental strand, 23810513 - 23810334
Alignment:
34 aaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctc 133  Q
    |||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||| || ||||||    
23810513 aaacaatcactctcacaaataatgttgacataacctttgttactacaaaaatcaagacctttctggatagcacgtaactcagctaacaacgcaccacctc 23810414  T
134 caactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaaaa 213  Q
    ||||||  ||||| |||||  ||| ||||| ||||| ||||| ||| |||| |||||||||| || ||||||||||||||    
23810413 caacttcatagtgggaaaactcagttatccaatctctatcgtagttacgaacaacaccaccagcacctaaacaaccaaaa 23810334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 12607934 - 12607758
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagc 104  Q
    ||||| ||||||||||||| ||||||||||||||| ||||| ||  |||||||||| |||||| ||||||||||||||||||||||| | |||| |||||    
12607934 gaccatcaataatcaggtctactgcttccaaacaatcactcaca--aataatgttgacataac-ttttttactacaaaaatcaagacatatctgcatagc 12607838  T
105 acgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaa 184  Q
    ||||||||| | | |||||||||||  ||||||||  || ||||||||||||||||||| ||||||||||||||| ||||    
12607837 acgtaactcggttaataacacatcatttccaacttcataatgagaaaaaccagctatccaatctccatcgtggttacgaa 12607758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 45260900 - 45261087
Alignment:
12 aataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttact-acaaaaatcaagacctgtctggatagcacgtaa 110  Q
    ||||||||| | || || |||||| |||  ||||||| ||||||||||| ||| |||||||||  | |||||||||||||||  ||| ||||||| | ||    
45260900 aataatcagcttaaatgattccaagcaattactctcacaaataatgttgtcatgaccttttttttttacaaaaatcaagacccatctagatagcatgcaa 45260999  T
111 ctcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaaca 198  Q
     |||||| ||||| |||||||||||||||  |||||||||||| ||| ||||| |||| ||||||||||||||| |||||||||||||    
45261000 atcagctaataacgcatcacctccaacttcatagtgagaaaaatcagttatccaatcttcatcgtggttgcgaacaacaccaccaaca 45261087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 29047243 - 29046995
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagc 104  Q
    ||||| || ||| ||||||||||||   ||||||| |||| |||||||||||||||   ||  || ||| | ||||||||||||||||||||||| ||||    
29047243 gaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgatgtagtctctttgattacaaaaatcaagacctgtctggttagc 29047147  T
105 acgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaa 204  Q
    ||||||||||||| ||||| |||||||||||  ||  ||||||||||||| |||||| | ||||||||||||||||| || |||||||||||||||||||    
29047146 acgtaactcagctaataacgcatcacctccagattcatagtgagaaaaactagctattcaatctccatcgtggttgcaaacaacaccaccaacatctaaa 29047047  T
205 caaccaaaatcttgtagaaaactaccatcaatattgagtttaagtatacctt 256  Q
    ||||||||||||| |||||| |||||||||||||||||||||||| ||||||    
29047046 caaccaaaatcttctagaaagctaccatcaatattgagtttaagtgtacctt 29046995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 2442386 - 2442196
Alignment:
75 actacaaaaatcaagacctgtctggatagcacgtaactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcg 174  Q
    |||||||||||||| |||| | |||||| |||||||||||||| ||||| |||||||||||||||  ||||||||||||| ||||||||  ||||||| |    
2442386 actacaaaaatcaacacctatttggataacacgtaactcagctaataacgcatcacctccaacttcatagtgagaaaaactagctatccagtctccattg 2442287  T
175 tggttgcgaataacaccaccaacatctaaacaaccaaaatcttgtagaaaactaccatcaatattgagtttaagtataccttatggagggg 265  Q
    |||||| | | ||||||||||||| |||||||||| ||||||   | |||||||||||||||||||||||||||  ||||||  |||||||    
2442286 tggttgtggacaacaccaccaacacctaaacaacccaaatctctaaaaaaactaccatcaatattgagtttaagagtaccttccggagggg 2442196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 10993004 - 10993104
Alignment:
13 ataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaact 112  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||| ||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||    
10993004 ataatcaggtcaactgctttcaaacaatcactctcacaaataatattgacataaccatttttactacaaaaatcaagacctatctagatagcacgtaact 10993103  T
113 c 113  Q
    |    
10993104 c 10993104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 6862024 - 6861922
Alignment:
8 cagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacg 107  Q
    |||||||||||||||||||| |||||||||||| ||||| | ||||||||||| ||||||| ||||||||||||||||||||| ||  ||| ||||||||    
6862024 cagcaataatcaggtcaactacttccaaacaactactcttacaaataatgttgacataaccatttttactacaaaaatcaagatctaactgaatagcacg 6861925  T
108 taa 110  Q
    |||    
6861924 taa 6861922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 2443309 - 2443242
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctttt 72  Q
    ||||| ||||||||| ||||||||||||||||||| || ||||| ||||||||||  |||| ||||||    
2443309 gaccatcaataatcaagtcaactgcttccaaacaatcattctcacaaataatgttcacatagcctttt 2443242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 53590188 - 53590441
Alignment:
12 aataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacgtaac 111  Q
    ||||| || ||||||| |||| |||||| |||||||| ||||||||||| || |  |||||||||| ||||||||||  | | |||   || ||| ||||    
53590188 aataaccatgtcaactccttcgaaacaatcactctcacaaataatgttgacaaagtcttttttactgcaaaaatcaaagcttatctttttatcacataac 53590287  T
112 tcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaaccaa 211  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||| ||||||||||  | |||| |||||||    
53590288 tcagctgataacacatcacctccaactttatagtgagaaaaaccagctatcaaatctccatcgtggttgcgaacaacaccaccacaacctaagcaaccaa 53590387  T
212 aatcttgtagaaaactaccatcaatattgagtttaagtataccttatggagggg 265  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||  |||||||    
53590388 aatcttgtagaaaactaccatcaatattgagtttgagtgtacctttcggagggg 53590441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 43445458 - 43445211
Alignment:
11 caataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcata--accttttttactacaaaaatcaagacctgtctggatagcacgt 108  Q
    ||||||| |||||||||||||||||||||  ||||||| ||||||||||| ||||     |||||||||| |||||||||||| | | ||||||| ||||    
43445458 caataataaggtcaactgcttccaaacaattactctcacaaataatgttgacatagttttttttttactataaaaatcaagacatatatggatagtacgt 43445359  T
109 aactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaac 208  Q
    ||||||| | ||||| |||||||||||||||  |||||| ||||| ||| ||||| || |||||||||||||||||  |||||||||||| |||||||||    
43445358 aactcagataataacgcatcacctccaacttcatagtgataaaaaacagatatccaatttccatcgtggttgcgaactacaccaccaacacctaaacaac 43445259  T
209 caaaatcttgtagaaaactaccatcaatattgagtttaagtatacctt 256  Q
    ||||||||| ||||||  ||||||||||||||||||| ||| ||||||    
43445258 caaaatcttctagaaacttaccatcaatattgagtttgagtgtacctt 43445211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 7320309 - 7320512
Alignment:
11 caataatcaggtcaactgcttccaaacaaccactctcataaataatgttggca-taaccttttttactacaaaaatcaagacctgtctggatagcacgta 109  Q
    ||||||||| ||| | | ||||||||||| ||||||||  |||||||||| || |  ||||||  |||||||||||||||||||||||||||||||||||    
7320309 caataatcaagtctagttcttccaaacaatcactctcactaataatgttgacaatgtcctttt--actacaaaaatcaagacctgtctggatagcacgta 7320406  T
110 actcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaacc 209  Q
    | |||||| ||||| ||||||||||| |||  |||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||| ||||||||||    
7320407 attcagctaataacgcatcacctccagcttcatagtgagaaaaaccagttatccagtctccatcgtggttgcgaacaacaccaccaacacctaaacaacc 7320506  T
210 aaaatc 215  Q
    ||||||    
7320507 aaaatc 7320512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 50425966 - 50425848
Alignment:
8 cagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctggatagcacg 107  Q
    |||||||||||||||||||||||||||||||| |||||| | |||||| |||| | || ||||| |||||| |||| | ||||| |||||  | |||| |    
50425966 cagcaataatcaggtcaactgcttccaaacaatcactcttacaaataacgttgacgtagcctttgttactataaaatttaagacatgtctatacagcatg 50425867  T
108 taactcagctgataacaca 126  Q
    ||||||| || ||||||||    
50425866 taactcaactaataacaca 50425848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 17508712 - 17508619
Alignment:
5 gaccagcaataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataaccttttttactacaaaaatcaagacctgtctg 98  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||| | ||| |  ||||  ||||||||||||||||||| ||||    
17508712 gaccatcaataatcaagtcaactgcttccaaacaagcactctcacaaataatgtagacatgattttttaaactacaaaaatcaagacctatctg 17508619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 12292074 - 12292328
Alignment:
11 caataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacc-ttttttactacaaaaatcaagacctgtctggatagcacgta 109  Q
    |||||||||| |||||||||||||| ||| |||||||| ||||||||||  |||| || ||||||   |||||||||||| ||| ||||||||| ||| |    
12292074 caataatcagctcaactgcttccaagcaatcactctcacaaataatgttatcatagcctttttttgaaacaaaaatcaagccctatctggatagtacgca 12292173  T
110 actcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctccatcgtggttgcgaataacaccaccaacatctaaacaacc 209  Q
    |||||| | |||||||||||||||||| ||  | |||||||||| ||  ||||  ||||||||| | ||||| || |||| ||||  || |||| ||  |    
12292174 actcagttaataacacatcacctccaaattcatggtgagaaaaatcaaatatctaatctccatc-ttgttgcaaacaacatcaccggcacctaagcactc 12292272  T
210 aaaatcttgtagaaaactaccatcaatattgagtttaagtataccttatggagggg 265  Q
    ||| |||| |||||| ||| ||| |||||||||||| ||| || ||| ||||||||    
12292273 aaagtcttctagaaagctatcattaatattgagtttgagtttatcttttggagggg 12292328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 12291927 - 12291988
Alignment:
13 ataatcaggtcaactgcttccaaacaaccactctcataaataatgttggcataacctttttt 74  Q
    |||||||| |||||||||||||| ||| |||||||| ||||||||||| |||| ||||||||    
12291927 ataatcagctcaactgcttccaagcaatcactctcacaaataatgttgtcatagcctttttt 12291988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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