View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16845_low_12 (Length: 280)
Name: NF16845_low_12
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16845_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 3 - 264
Target Start/End: Original strand, 33040866 - 33041127
Alignment:
| Q |
3 |
gaagtaaccaatggagattaggtttagtggaagggactagtcttctataatgtggcagagtaaaatttaaaatagctgaaataaacatattagagttgac |
102 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33040866 |
gaagtaaccaatgaagattaggtttagtggaagggactagtcttctataatgtggcagagtaaaatttaaaatagctgaaataaacatattagagttgac |
33040965 |
T |
|
| Q |
103 |
actcaagagagagaactaattgtgattgcaagatgcatttcactattgataatccgaactttacaatgaacgaagagtgatcaaatgatgattgatggca |
202 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33040966 |
actcaagagagaaaattaattgtgattgcaagatgcatttcactattgatcatctgaactttacaatgaacgaagagtgatcaaatgatgattgatggca |
33041065 |
T |
|
| Q |
203 |
accatgttgtattctgataatggaaaacttatgatatcattgctttgatgcttgacttaaac |
264 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33041066 |
accatgttgtattctaataatggaaaacttatgatatcattgctttgatgcttgacttaaac |
33041127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 33043035 - 33043088
Alignment:
| Q |
99 |
tgacactcaagagagagaactaattgtgattgcaagatgcatttcactattgat |
152 |
Q |
| |
|
|||||||| ||||| | ||||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
33043035 |
tgacactcgagagaaaaaactagttgtgattgcaatatgcatttcattattgat |
33043088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University