View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16845_low_17 (Length: 250)
Name: NF16845_low_17
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16845_low_17 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 38372653 - 38372429
Alignment:
| Q |
26 |
tagctagaacatagtattcggtcattaatgtttgaagatctttgaatttggtaacttgtcacttctattacactgatgtattcttgcatggaatgagatc |
125 |
Q |
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| T |
38372653 |
tagctagaacatagtattcggtcattaatgtttgaagatctttgaatttggtaacttgtcacttctattacactgatgtattcttgcatggaatgagatc |
38372554 |
T |
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| Q |
126 |
gtgtatttgttgattcattcattttgtagaggcattctctgttggaggaggaactagtactacttattcaaagcttggggagaatacatggtctattctt |
225 |
Q |
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| T |
38372553 |
gtgtatttgttgattcattcattttgtagaggcattctctgttggaggaggaactagtactacttattcaaagcttggggagaattcatggtctattctt |
38372454 |
T |
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| Q |
226 |
ttatgtaataaatttcctttcctgc |
250 |
Q |
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|||||| |||||||||||||||||| |
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| T |
38372453 |
ttatgtcataaatttcctttcctgc |
38372429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 38377770 - 38377712
Alignment:
| Q |
49 |
attaatgtttgaagatctttgaatttggtaacttgtcacttctattacactgatgtatt |
107 |
Q |
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|||||||| ||||||||| || |||||||||| |||||| ||||| |||||||||||| |
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| T |
38377770 |
attaatgtctgaagatctatgtatttggtaaccagtcactgctattgcactgatgtatt |
38377712 |
T |
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