View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16845_low_18 (Length: 243)
Name: NF16845_low_18
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16845_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 30073513 - 30073295
Alignment:
| Q |
11 |
cacagacatgaatctctctcaaaagacctaatttttcacaaaaaatcaaaccaagaacctctcactaaagagcattccaatatgctataacactattgtg |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30073513 |
cacaaacatgaatctctctcaaaagacctaatttttcacaaaaaatcaaaccaagaacctctcactaaagagcattccaatatgctataacactattgtg |
30073414 |
T |
|
| Q |
111 |
catctaaacaaggttatgcatctaaagtgtcataatttaaattgtatatcagttataacaagggtttcatataaagattcaaaattgcaacctgggtcgc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30073413 |
catctaaacaaggttatgcatctaaagtgtcataatttaaattgtatatcaattataacaagggtttcatataaagattcaaaattgcaacctgggtcgc |
30073314 |
T |
|
| Q |
211 |
gacacaacggttctttatg |
229 |
Q |
| |
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|||||||| |||||||||| |
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| T |
30073313 |
gacacaacagttctttatg |
30073295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 229
Target Start/End: Complemental strand, 4895604 - 4895504
Alignment:
| Q |
131 |
tctaaagtgtcataatttaaattgtatatcagttataacaagggtttcatata--aagattcaaaattgcaacctgggtcgcgacacaacggttctttat |
228 |
Q |
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||||||||||||||||||||||||||||| ||||| || |||||||| ||||| |||||||| |||||||| ||||| ||| ||| ||| |||||||| |
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| T |
4895604 |
tctaaagtgtcataatttaaattgtatattagttacaataagggttttatataagaagattcacaattgcaatctgggccgcaacataactattctttat |
4895505 |
T |
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| Q |
229 |
g |
229 |
Q |
| |
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| |
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| T |
4895504 |
g |
4895504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 30073975 - 30073910
Alignment:
| Q |
31 |
aaaagacctaatttttcacaaaaaatcaaaccaagaacctctcactaaagagcattccaatatgctat |
98 |
Q |
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|||||||||||||||| | ||| ||||||| || |||||||||||||| |||||||||||||||||| |
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| T |
30073975 |
aaaagacctaatttttaagaaagaatcaaatcaggaacctctcactaa--agcattccaatatgctat |
30073910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 21466054 - 21465884
Alignment:
| Q |
11 |
cacagacatgaatctctctcaaaagacctaatttttcacaaaaaatcaaaccaagaacctctcactaaagagcattccaatatgctataacactattgtg |
110 |
Q |
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|||| ||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21466054 |
cacaaacaagaatctctctcgaaagacctaatttttcacaaagaatgaaaccaagaacctctcactaaagagcattccaatatgctataacactattgtg |
21465955 |
T |
|
| Q |
111 |
catctaaacaaggttatgcatctaaagtgtcataatttaaattgtatatcagttataacaagggtttcatataaagattcaaaattgca |
199 |
Q |
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|||| |||||||||||||||||| |||||||||||||| | |||||||||||||||| ||||||||||||| |
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| T |
21465954 |
catc------------------taaagtgtcataatttaatttgtatatcagttacattaagggtttcatataaaaattcaaaattgca |
21465884 |
T |
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