View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16845_low_2 (Length: 581)
Name: NF16845_low_2
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16845_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Complemental strand, 21078577 - 21077996
Alignment:
| Q |
1 |
cgagacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcacgatgctgcgctttttctttttatgggaacttggag |
100 |
Q |
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| T |
21078577 |
cgagacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttcttctcacgatgctgcgttttttctttttatgggaacttggag |
21078478 |
T |
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| Q |
101 |
gaaaatatttggataagttaataactggtggtgcatcatccacttgaaactgatcaagatcacacatatcactctgttgctccaagaaggagacagggaa |
200 |
Q |
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| T |
21078477 |
gcaaatatttggataagttaataactggtggtgcatcatccacttgaaactgatcaagatcacacatatcactctgttgctccaagaaggagacagggaa |
21078378 |
T |
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| Q |
201 |
gaaggatgtggttggagactcaatacccttttcgcggtgcgatctcatgttggaaggaaaaaccttatcatggtcaagaaaagcatgcttctgcttccta |
300 |
Q |
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| T |
21078377 |
gaaggatgtggtcggagactcaatacccttttcgcagtgcgatctcatgttggacggaaaaaccttatcatagtcaagaaatgcatgcttctgcttccta |
21078278 |
T |
|
| Q |
301 |
tgatcatcaagaacatcatgtttatgtttcttggtcagaggttgttgaacaaggtgatcagagcggtggtgatgtgatttgtggccaccgagtgcagtgc |
400 |
Q |
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| T |
21078277 |
tgatcatcaagaacatcatgtttctgtttcttggtcagaggttgttgaacaaggtgatcagagcggtggtgatgtgatttgtggccgccgagtgcagtgc |
21078178 |
T |
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| Q |
401 |
cggaggtgaagattctgtggcacaaatcacatttgaacattgttgatattaaacaaccaatattctttttctgctcatc------------gtgatcata |
488 |
Q |
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| T |
21078177 |
cggaggtgaagattctgtggcacaaatcacatttgaacattgttgatattgaacaaccaatattctttttctgatcatcagtagcatcatggtgatcata |
21078078 |
T |
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| Q |
489 |
ttctttcttttgttgttgttgtttatggttgtcgtaacaagaacgatgagaaaaatgtttcttcatgatcgtgatgatgatg |
570 |
Q |
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| T |
21078077 |
ttctttcttttgatgttgttgtttatggttgtcgtaacaagaacgaagagaaaaatgtttcttcatgatcgtgatgatgatg |
21077996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 3073724 - 3073780
Alignment:
| Q |
3 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
59 |
Q |
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||||||||| |||||| ||| |||| |||||||| ||||||||||||| |||||||| |
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| T |
3073724 |
agacatatcgaagagtgtatatgctccattaagatgttcatgatcaatgatatttct |
3073780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 27732088 - 27732144
Alignment:
| Q |
3 |
agacatatccaagagtatatgtgctgcattaagaagttcatgatcaatcatatttct |
59 |
Q |
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|||||||| |||||| | |||||| |||||||| ||||||||||||| |||||||| |
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| T |
27732088 |
agacatattgaagagtgtttgtgctccattaagatgttcatgatcaatgatatttct |
27732144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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