View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16845_low_20 (Length: 237)

Name: NF16845_low_20
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16845_low_20
NF16845_low_20
[»] scaffold0038 (5 HSPs)
scaffold0038 (44-171)||(35450-35577)
scaffold0038 (44-170)||(43681-43807)
scaffold0038 (44-166)||(28178-28300)
scaffold0038 (173-220)||(24400-24447)
scaffold0038 (11-47)||(35687-35723)
[»] chr6 (38 HSPs)
chr6 (44-171)||(28235288-28235415)
chr6 (44-170)||(28243519-28243645)
chr6 (44-171)||(28181840-28181967)
chr6 (44-171)||(28297072-28297199)
chr6 (60-171)||(28326201-28326312)
chr6 (60-171)||(28503837-28503948)
chr6 (44-171)||(28514874-28515001)
chr6 (44-171)||(28186116-28186243)
chr6 (44-166)||(28227680-28227802)
chr6 (173-220)||(28223902-28223949)
chr6 (43-145)||(26849461-26849563)
chr6 (63-159)||(26937764-26937860)
chr6 (58-166)||(29843333-29843441)
chr6 (11-47)||(28235525-28235561)
chr6 (63-126)||(26056690-26056753)
chr6 (63-126)||(26076660-26076723)
chr6 (63-126)||(27705755-27705818)
chr6 (44-165)||(28097775-28097896)
chr6 (63-151)||(25580465-25580553)
chr6 (66-126)||(27530655-27530715)
chr6 (63-135)||(27697937-27698009)
chr6 (11-47)||(28182078-28182114)
chr6 (11-47)||(28296926-28296962)
chr6 (11-47)||(28326438-28326474)
chr6 (11-47)||(28504074-28504110)
chr6 (11-47)||(28515111-28515147)
chr6 (63-126)||(25511660-25511723)
chr6 (63-126)||(26143636-26143699)
chr6 (62-108)||(26812314-26812360)
chr6 (81-135)||(27337464-27337518)
chr6 (81-135)||(27398204-27398258)
chr6 (44-145)||(26975700-26975801)
chr6 (65-126)||(27426965-27427026)
chr6 (63-123)||(26803217-26803277)
chr6 (81-145)||(26950492-26950556)
chr6 (81-145)||(26959875-26959939)
chr6 (63-127)||(28140302-28140366)
chr6 (81-157)||(29477437-29477513)
[»] scaffold0019 (2 HSPs)
scaffold0019 (44-171)||(57626-57753)
scaffold0019 (11-47)||(57480-57516)
[»] chr2 (1 HSPs)
chr2 (44-165)||(3280388-3280509)
[»] chr5 (1 HSPs)
chr5 (44-157)||(16691604-16691717)
[»] chr4 (2 HSPs)
chr4 (64-163)||(5090305-5090404)
chr4 (65-126)||(18074529-18074590)
[»] chr1 (3 HSPs)
chr1 (66-126)||(28127029-28127089)
chr1 (66-126)||(28163729-28163789)
chr1 (44-126)||(267672-267754)
[»] scaffold0003 (1 HSPs)
scaffold0003 (65-126)||(60337-60398)


Alignment Details
Target: scaffold0038 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 35577 - 35450
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35577 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttccaattccacca 35478  T
Q  144 gtcccatagatccctagcatctgaactt 171  Q
    ||||||||||||||||||||||||||||    
T  35477 gtcccatagatccctagcatctgaactt 35450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 43807 - 43681
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43807 tgaattttcccttacatcgtgaagaaaacataaacaatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 43708  T
Q  144 gtcccatagatccctagcatctgaact 170  Q
    |||||||||||||||||||| ||||||    
T  43707 gtcccatagatccctagcatatgaact 43681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 28300 - 28178
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||||||||||||| |    
T  28300 tgaattttcccttacatcgtgaagaaaacacaaaccatcaaattgatcggctataaaattataaactgcccttgcaagtgttgtctttcccattccacga 28201  T
Q  144 gtcccatagatccctagcatctg 166  Q
     |||| |||||||||| ||||||    
T  28200 ttcccgtagatccctatcatctg 28178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 24447 - 24400
Alignment:
Q  173 ttgatgattagagtttgtattttaatatctaaatcaaaatcattactg 220  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  24447 ttgatgattagagtttgtattttaatatttaaatcaaaatcattactg 24400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 35723 - 35687
Alignment:
Q  11 acatcatctagaatcaacagaaccttctttcggtgaa 47  Q
    |||||||||||||||||||||||||||||||||||||    
T  35723 acatcatctagaatcaacagaaccttctttcggtgaa 35687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 28235415 - 28235288
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28235415 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttccaattccacca 28235316  T
Q  144 gtcccatagatccctagcatctgaactt 171  Q
    ||||||||||||||||||||||||||||    
T  28235315 gtcccatagatccctagcatctgaactt 28235288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 28243645 - 28243519
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28243645 tgaattttcccttacatcgtgaagaaaacataaacaatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 28243546  T
Q  144 gtcccatagatccctagcatctgaact 170  Q
    |||||||||||||||||||| ||||||    
T  28243545 gtcccatagatccctagcatatgaact 28243519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 28181967 - 28181840
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||    
T  28181967 tgaatttgcccttatgtcgttaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagcgtcgtctttcccattcctcca 28181868  T
Q  144 gtcccatagatccctagcatctgaactt 171  Q
    ||||||||||||||||||||||||||||    
T  28181867 gtcccatagatccctagcatctgaactt 28181840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 171
Target Start/End: Original strand, 28297072 - 28297199
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  28297072 tgaattttcccttacattgtgaagaaaacacaaaccatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccatccctcca 28297171  T
Q  144 gtcccatagatccctagcatctgaactt 171  Q
    ||||||||||||||||||||||||||||    
T  28297172 gtcccatagatccctagcatctgaactt 28297199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 28326312 - 28326201
Alignment:
Q  60 tcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatcccta 159  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326312 tcgttaagaaaacacaaaccatcaaattgatcggctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatcccta 28326213  T
Q  160 gcatctgaactt 171  Q
    ||||||||||||    
T  28326212 gcatctgaactt 28326201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 28503948 - 28503837
Alignment:
Q  60 tcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatcccta 159  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28503948 tcgttaagaaaacacaaaccatcaaattgatcggctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatcccta 28503849  T
Q  160 gcatctgaactt 171  Q
    ||||||||||||    
T  28503848 gcatctgaactt 28503837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 28515001 - 28514874
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  28515001 tgaattttcccttacattgtgaagaaaacacaaaccatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccatccctcca 28514902  T
Q  144 gtcccatagatccctagcatctgaactt 171  Q
    ||||||||||||||||||||||||||||    
T  28514901 gtcccatagatccctagcatctgaactt 28514874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 28186243 - 28186116
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||    
T  28186243 tgaatttccccttacatcgtgaagaaaacacaaatcatcaaattgatcagctagggaattataaactgctcttgcaagtgtcgtctttcccattcctcca 28186144  T
Q  144 gtcccatagatccctagcatctgaactt 171  Q
    | ||||||||||||||||||||||||||    
T  28186143 ggcccatagatccctagcatctgaactt 28186116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 28227802 - 28227680
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||||||||||||| |    
T  28227802 tgaattttcccttacatcgtgaagaaaacacaaaccatcaaattgatcggctataaaattataaactgcccttgcaagtgttgtctttcccattccacga 28227703  T
Q  144 gtcccatagatccctagcatctg 166  Q
     |||| |||||||||| ||||||    
T  28227702 ttcccgtagatccctatcatctg 28227680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 28223949 - 28223902
Alignment:
Q  173 ttgatgattagagtttgtattttaatatctaaatcaaaatcattactg 220  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  28223949 ttgatgattagagtttgtattttaatatttaaatcaaaatcattactg 28223902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 26849563 - 26849461
Alignment:
Q  43 gtgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacc 142  Q
    |||||||||| || || |||||||| ||||||  ||  |||||||||||||| || |||||||||||||||   ||||||||||| ||||||||||| ||    
T  26849563 gtgaattttctctcacatcgtgaaggaaacacttacattcaaattgatcagcaatcgaattataaactgcttgagcaagtgttgtttttcccattcctcc 26849464  T
Q  143 agt 145  Q
    |||    
T  26849463 agt 26849461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 26937860 - 26937764
Alignment:
Q  63 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatcccta 159  Q
    ||||||||||||||||  |||||||||||| | ||  ||||||||| ||||| |||||||||||  || || ||||| ||| |||||||||||||||    
T  26937860 tgaagaaaacacaaactttcaaattgatcaccaatcaaattataaattgctcgtgcaagtgttgatttaccaattccgccaatcccatagatcccta 26937764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 29843333 - 29843441
Alignment:
Q  58 cgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccc 157  Q
    |||||||||||||||||||||  ||||||| |||||| ||  ||||||||| |||||  ||||||||||| || |||| ||||||| | ||||| |||||    
T  29843333 cgtcgtgaagaaaacacaaacattcaaatttatcagcaatcaaattataaattgctcgagcaagtgttgttttacccaatccaccaattccataaatccc 29843432  T
Q  158 tagcatctg 166  Q
     | ||||||    
T  29843433 caccatctg 29843441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 28235561 - 28235525
Alignment:
Q  11 acatcatctagaatcaacagaaccttctttcggtgaa 47  Q
    |||||||||||||||||||||||||||||||||||||    
T  28235561 acatcatctagaatcaacagaaccttctttcggtgaa 28235525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 26056753 - 26056690
Alignment:
Q  63 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 126  Q
    ||||||||||| | ||| |||||||||||||| || |||||| |||||||| ||||||||||||    
T  26056753 tgaagaaaacatacaccttcaaattgatcagcaatagaattaaaaactgcttttgcaagtgttg 26056690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 26076723 - 26076660
Alignment:
Q  63 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 126  Q
    ||||||||||| | ||| |||||||||||||| || |||||| |||||||| ||||||||||||    
T  26076723 tgaagaaaacatacaccttcaaattgatcagcaatagaattaaaaactgcttttgcaagtgttg 26076660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 27705755 - 27705818
Alignment:
Q  63 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 126  Q
    ||||||||||| ||||| |||||||||||||| |   ||||||||| |||||||||||||||||    
T  27705755 tgaagaaaacataaaccttcaaattgatcagcaacaaaattataaattgctcttgcaagtgttg 27705818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 28097775 - 28097896
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    ||||||||| || || | |||||| ||||| | ||  ||||||||| |||| ||| |||||||||| ||| |||||||||||||||| || || || ||     
T  28097775 tgaattttctctcacattgtgaaggaaacagacacattcaaattgaccagcaatgaaattataaaccgcttttgcaagtgttgtcttacctatccctcct 28097874  T
Q  144 gtcccatagatccctagcatct 165  Q
    |  ||||||||||| |||||||    
T  28097875 ggtccatagatcccaagcatct 28097896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 25580553 - 25580465
Alignment:
Q  63 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccata 151  Q
    ||||||||||| | ||| |||||||||||||| |   |||||||||||||| ||||||||||||  || ||||| || ||||| |||||    
T  25580553 tgaagaaaacatacaccttcaaattgatcagcaacaaaattataaactgcttttgcaagtgttgatttacccatgcctccagtaccata 25580465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 27530655 - 27530715
Alignment:
Q  66 agaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 126  Q
    |||||||| ||| | |||||||||||||| ||| ||||||||| |||| ||||||||||||    
T  27530655 agaaaacataaaacttcaaattgatcagcaatgaaattataaattgcttttgcaagtgttg 27530715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 27697937 - 27698009
Alignment:
Q  63 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttccca 135  Q
    ||||||||||| ||||| |||||||||||||| |   ||||||| | |||||||||||||||||  |||||||    
T  27697937 tgaagaaaacataaaccttcaaattgatcagcaaccaaattatagattgctcttgcaagtgttgattttccca 27698009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 28182114 - 28182078
Alignment:
Q  11 acatcatctagaatcaacagaaccttctttcggtgaa 47  Q
    ||||||||||||||||| |||||||||||||||||||    
T  28182114 acatcatctagaatcaatagaaccttctttcggtgaa 28182078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 28296926 - 28296962
Alignment:
Q  11 acatcatctagaatcaacagaaccttctttcggtgaa 47  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28296926 acatcatctagaatcaacaaaaccttctttcggtgaa 28296962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 28326474 - 28326438
Alignment:
Q  11 acatcatctagaatcaacagaaccttctttcggtgaa 47  Q
    |||||||| ||||||||||||||||||||||||||||    
T  28326474 acatcatcgagaatcaacagaaccttctttcggtgaa 28326438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 28504110 - 28504074
Alignment:
Q  11 acatcatctagaatcaacagaaccttctttcggtgaa 47  Q
    |||||||| ||||||||||||||||||||||||||||    
T  28504110 acatcatcgagaatcaacagaaccttctttcggtgaa 28504074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 28515147 - 28515111
Alignment:
Q  11 acatcatctagaatcaacagaaccttctttcggtgaa 47  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28515147 acatcatctagaatcaacaaaaccttctttcggtgaa 28515111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 25511723 - 25511660
Alignment:
Q  63 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 126  Q
    ||||||||||| | ||  |||||||||||||| || |||||| |||||||| ||||||||||||    
T  25511723 tgaagaaaacatacactttcaaattgatcagcaatagaattaaaaactgcttttgcaagtgttg 25511660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 26143699 - 26143636
Alignment:
Q  63 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 126  Q
    ||||||||||| | ||| |||||||||||||| |   |||||||||||||| ||||||||||||    
T  26143699 tgaagaaaacatacaccttcaaattgatcagcaacaaaattataaactgcttttgcaagtgttg 26143636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 26812360 - 26812314
Alignment:
Q  62 gtgaagaaaacacaaaccatcaaattgatcagctatggaattataaa 108  Q
    |||||| |||||||||||||||||||||||||| ||  |||||||||    
T  26812360 gtgaaggaaacacaaaccatcaaattgatcagcaatcaaattataaa 26812314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 27337464 - 27337518
Alignment:
Q  81 tcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttccca 135  Q
    |||||||||||||| ||| ||||||||| |||| ||||||||||||  |||||||    
T  27337464 tcaaattgatcagcaatgaaattataaattgcttttgcaagtgttgattttccca 27337518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 27398204 - 27398258
Alignment:
Q  81 tcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttccca 135  Q
    |||||||||||||| ||| ||||||||| |||| ||||||||||||  |||||||    
T  27398204 tcaaattgatcagcaatgaaattataaattgcttttgcaagtgttgattttccca 27398258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 26975801 - 26975700
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    ||||||||| || || |||||||| |||||   ||  |||||||||| ||| ||  ||||||||||||||   |||||||||||||| |||||||| |||    
T  26975801 tgaattttctctcacatcgtgaaggaaacagttacattcaaattgattagcaatcaaattataaactgcttgagcaagtgttgtcttacccattccccca 26975702  T
Q  144 gt 145  Q
    ||    
T  26975701 gt 26975700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 27426965 - 27427026
Alignment:
Q  65 aagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 126  Q
    ||||||||| ||||| |||||||||||||| |   ||||||| | |||||||||||||||||    
T  27426965 aagaaaacataaaccttcaaattgatcagcaacaaaattatagattgctcttgcaagtgttg 27427026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 26803277 - 26803217
Alignment:
Q  63 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtg 123  Q
    ||||||||||| ||||| |||||||||||||| |   ||||||| | ||||||||||||||    
T  26803277 tgaagaaaacataaaccttcaaattgatcagcaacaaaattatagattgctcttgcaagtg 26803217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 26950556 - 26950492
Alignment:
Q  81 tcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagt 145  Q
    |||||||||| ||| ||  | ||||||||||||   ||||||||||||||||||||||| |||||    
T  26950556 tcaaattgattagcaatcaagttataaactgcttgagcaagtgttgtctttcccattcccccagt 26950492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 26959939 - 26959875
Alignment:
Q  81 tcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagt 145  Q
    |||||||||| | | || |||||||||||||||   | ||||||||||||||||||||| |||||    
T  26959939 tcaaattgatgaacaatcgaattataaactgcttgagaaagtgttgtctttcccattcctccagt 26959875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 28140366 - 28140302
Alignment:
Q  63 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgt 127  Q
    ||||||||||||||||  ||||||||||| || ||  ||||||||| ||||  ||||||||||||    
T  28140366 tgaagaaaacacaaacattcaaattgatcggcaataaaattataaattgcttgtgcaagtgttgt 28140302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 29477437 - 29477513
Alignment:
Q  81 tcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccc 157  Q
    ||||||||||| |  || | ||||||||||||||  ||||||||||| || || ||||| ||| |||||||||||||    
T  29477437 tcaaattgatccgaaatcgtattataaactgctcgagcaagtgttgttttccctattccgccaatcccatagatccc 29477513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 44 - 171
Target Start/End: Original strand, 57626 - 57753
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||    
T  57626 tgaattttcccttacgtcgtgaagaaaacacaaatcatcaaattgatcggctatggaattaaaaactgctctagcaagtgttgtctttcccattcctcca 57725  T
Q  144 gtcccatagatccctagcatctgaactt 171  Q
     | || ||||||||||||||||||||||    
T  57726 attccgtagatccctagcatctgaactt 57753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 57480 - 57516
Alignment:
Q  11 acatcatctagaatcaacagaaccttctttcggtgaa 47  Q
    |||||||| |||||||||| |||||||||||||||||    
T  57480 acatcatcgagaatcaacaaaaccttctttcggtgaa 57516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 3280509 - 3280388
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    ||||||||| || || | |||||||||||| | ||  |||||||||| ||| ||| |||||||||||||||||||||| |||||||| |||||||| |||    
T  3280509 tgaattttctctcacattgtgaagaaaacatacacattcaaattgattagcaatgaaattataaactgctcttgcaagagttgtcttacccattcctcca 3280410  T
Q  144 gtcccatagatccctagcatct 165  Q
       |||||||| |||| |||||    
T  3280409 agtccatagatacctatcatct 3280388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 16691717 - 16691604
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 143  Q
    ||||||||| || ||||| ||||||||||||||||  |||||||||||||| ||  ||||||||| |||||  ||||||||||| || || ||||| |||    
T  16691717 tgaattttctctcacgtcatgaagaaaacacaaacattcaaattgatcagcaatcaaattataaattgctcgagcaagtgttgttttaccgattcctcca 16691618  T
Q  144 gtcccatagatccc 157  Q
     | |||| ||||||    
T  16691617 attccatggatccc 16691604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 5090305 - 5090404
Alignment:
Q  64 gaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccctagcat 163  Q
    |||||||||| | ||  |||||||||| ||| ||| |||| |||| |||| || ||||||| || || |||||||| |||||||||||||||||||||||    
T  5090305 gaagaaaacaaagacattcaaattgatgagcaatgaaattgtaaattgcttttccaagtgtggttttacccattcctccagtcccatagatccctagcat 5090404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 18074590 - 18074529
Alignment:
Q  65 aagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 126  Q
    ||||||||| ||||| |||||||||||||| |   ||||||| | |||||||||||||||||    
T  18074590 aagaaaacataaaccttcaaattgatcagcaacaaaattatagattgctcttgcaagtgttg 18074529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 28127029 - 28127089
Alignment:
Q  66 agaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 126  Q
    |||||||| ||||| |||||||||||||| ||| ||||||||| |||| ||||||||||||    
T  28127029 agaaaacataaaccttcaaattgatcagcaatgaaattataaattgcttttgcaagtgttg 28127089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 28163729 - 28163789
Alignment:
Q  66 agaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 126  Q
    |||||||| ||||| |||||||||||||| ||| ||||||||| |||| ||||||||||||    
T  28163729 agaaaacataaaccttcaaattgatcagcaatgaaattataaattgcttttgcaagtgttg 28163789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 267672 - 267754
Alignment:
Q  44 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 126  Q
    ||||||||| || || || ||||||||||| || || |||||||||||||| ||  ||||||| | |||||||||||| ||||    
T  267672 tgaattttctctcacatcatgaagaaaacataatccttcaaattgatcagcaataaaattatagattgctcttgcaagggttg 267754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 60398 - 60337
Alignment:
Q  65 aagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 126  Q
    ||||||||| ||||| |||||||||||||| |   ||||||| | |||||||||||||||||    
T  60398 aagaaaacataaaccttcaaattgatcagcaacaaaattatagattgctcttgcaagtgttg 60337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University