View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16845_low_3 (Length: 469)
Name: NF16845_low_3
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16845_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 26619412 - 26619845
Alignment:
| Q |
18 |
tgaatctaactcttgattaattaatcttgctttcatgtcccaatactattgttcttgtgaattttagaaataattgactcgattgcgtagctctcatata |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| ||| |
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| T |
26619412 |
tgaatctaactcttgattgattaatcttgctttcatgtcccaatactattgttcttgtgaattttagaaatagatgactcaattgcatagctctcacata |
26619511 |
T |
|
| Q |
118 |
aagataactttcatcgtgtctcacatttatagagagaagtcactcaatgcgctaacaagattgccgacctttgcatcactttaacaattatcaatggtgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |
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| T |
26619512 |
aagataactttcatcgtgtctcacatttatagagagaagtcactcaatgcgctaacaagcttgccaacctttgcatcactttaacaattgtcaatggtgg |
26619611 |
T |
|
| Q |
218 |
gaggctattcctcatagtattattatcttgaatgtatttactacgaaagaattgatctacctgagcataaatttagttaactttttgtttattgagcatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26619612 |
gaggctattcctcatagtattattatcttgaatgtatttactacgaaagaattgatctacctgagcataaatttagttaactttttgtttattgagcact |
26619711 |
T |
|
| Q |
318 |
gcacatgttttctctttaccttagtctcataatttggttattaaaggacaagagtggggtggttctcaaatttcatccatgaaaatttgagtgttctgtc |
417 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26619712 |
gcacttgctttctctttaccttagtctcataatttggttattaaaggacaagagtggggtggttctcaattttcatccatgaaaatttgagtgttctgtc |
26619811 |
T |
|
| Q |
418 |
gattgaattttattgtatgtagggttacatgatt |
451 |
Q |
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| T |
26619812 |
tattgaattttattgtatgtagggttacatgatt |
26619845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 26608844 - 26609156
Alignment:
| Q |
18 |
tgaatctaactcttgattaattaatcttgctttcatgtcccaatactattgttcttgtgaattttagaaataattgactcgattgcgtagctctcatata |
117 |
Q |
| |
|
||||||||||| |||||| || ||||||||||||||| || |||| ||||||||||||||||||| ||||| |||||||||||||||||| ||| ||| |
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| T |
26608844 |
tgaatctaacttttgattgatcaatcttgctttcatgacctgataccattgttcttgtgaatttta-aaatagatgactcgattgcgtagctttcacata |
26608942 |
T |
|
| Q |
118 |
aagataactttcatcgtgtctcacatttatagagagaagtcactcaatgcgctaacaagattgccgacctttgcatcactttaacaattatcaatggtgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||| || |||||||| ||||||||| |
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| T |
26608943 |
aagataactttcatcgtgtctcacatttatagag--aagtcactcaatgcgctaacaagcttgccaaccttcgcatcatttgaacaattaccaatggtgg |
26609040 |
T |
|
| Q |
218 |
gaggctattcctcatagtattattatcttgaatgtatttactacgaaagaattgatctacctgagcataaatttagttaactttttgtttattgagcatt |
317 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
26609041 |
gaggctattcctca------taatatcttgaatgtatttactacgaaataattgatctacctgagcataaattttgttaactttttatttgttgagcatt |
26609134 |
T |
|
| Q |
318 |
gcacatgttttctctttacctt |
339 |
Q |
| |
|
||| |||||||||| ||||| |
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| T |
26609135 |
acactcgttttctcttcacctt |
26609156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 26621400 - 26621680
Alignment:
| Q |
18 |
tgaatctaactcttgattaattaatcttgctttcatgtcccaatactattgttcttgtgaattttagaaataattgactcgattgcgtagctctcatata |
117 |
Q |
| |
|
|||||||| || || ||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||| |||| ||||| ||| |
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| T |
26621400 |
tgaatctatcttttaattgatcaatcttgctttcatgtccca-tactattgttcttgtgaattttagaaatagatgatttgattgtgtaggtctcacata |
26621498 |
T |
|
| Q |
118 |
aagataactttcatcgtgtctcacatttatagagagaagtcactcaatgcgctaacaagattgccgacctttgcatcactttaacaattatcaatggtgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||| | || || ||||| || ||||||||| |
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| T |
26621499 |
aagataactttcatcgtgtctcacatttat--agagaagtcactcaatgcgctcacaagcttgccaaccttcaccccatttgaacaactaccaatggtgg |
26621596 |
T |
|
| Q |
218 |
gaggctattcctcatagtattattatcttgaatgtatttactacgaaagaattgatctacctgagcataaatttagttaactttttgttt |
307 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||| ||| |||||||||||||| ||||||||||| | ||||||||||||| |
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| T |
26621597 |
gaggctattcctcatag------tttcttgaatgtatttactatgaatgaattgatctaccttagcataaattttgctaactttttgttt |
26621680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 26622169 - 26622260
Alignment:
| Q |
339 |
tagtctcataatttggttattaaaggacaagagtggggtggttctcaaatttcatccatgaaaatttgagtgttctgtcgattgaattttat |
430 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26622169 |
tagtctcataatttggttactaaaggacaagagtggattggttctcaattttcatccatgaaaatttgagtgttctgtctattgaattttat |
26622260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 436
Target Start/End: Original strand, 26616697 - 26616796
Alignment:
| Q |
339 |
tagtctcataatttggttattaaaggaca--agagtggggtggttctcaaatttcatccatgaaaatttgagtgttctgtcgattgaattttattgtatg |
436 |
Q |
| |
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||||||||||| |||||| ||||||||| ||| ||| |||||||||| | ||| ||||||||| || |||||||||| ||||||||| |||||||| |
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| T |
26616697 |
tagtctcataaattggttgctaaaggacaatagactggattggttctcaattctcacccatgaaaagtttggtgttctgtcaattgaatttaattgtatg |
26616796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 436
Target Start/End: Complemental strand, 26652744 - 26652646
Alignment:
| Q |
339 |
tagtctcataatttggttattaaaggac--aagagtggggtggttctcaaatttcatccatgaaaatttgagtgttctgtcgattgaattttattgtatg |
436 |
Q |
| |
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||||||||||| |||||| |||||||| |||| ||| |||||||||| | ||| |||||||| |||| |||||||||| ||||||||| |||||||| |
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| T |
26652744 |
tagtctcataaattggttgctaaaggacaaaagactggattggttctcaattctcacccatgaaattttg-gtgttctgtcaattgaatttaattgtatg |
26652646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 455
Target Start/End: Original strand, 26609592 - 26609628
Alignment:
| Q |
419 |
attgaattttattgtatgtagggttacatgattatga |
455 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||| |
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|
| T |
26609592 |
attgaattttattgtatgtagggttatattattatga |
26609628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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