View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16845_low_4 (Length: 461)
Name: NF16845_low_4
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16845_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 55329238 - 55329678
Alignment:
| Q |
19 |
gtcgattcatgttcatcaacaccaatcctctcttcgatgaaatcttcgaacttatgtccaaaaaggttggatgctacagtccctcttccaattctctctg |
118 |
Q |
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| T |
55329238 |
gtcgattcatgttcatcaacaccaatcctctcttcgatgaaatcttcgaacttatgtccaaaaaggttggatgctacagtccctcttccaattctctctg |
55329337 |
T |
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| Q |
119 |
gcgtactggtggatttctcaccaacagcaacagtcccaagaagtttcgatctcgcaacaagaaactttgcttcggtcccactcagcctcccgattgcatc |
218 |
Q |
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| T |
55329338 |
gcgtactggtggatttctcaccaacagcaacagtcccaagaagtttcgatctcgcaacaagaaactttgcttcggtcccactcagcctcccgattgcatc |
55329437 |
T |
|
| Q |
219 |
gtcattgtcgataccgagagcaagtcttctgttattgacgaggctttcaaacttcacattccaattgtcgctcttgttgattctgctatgcctctccata |
318 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55329438 |
gtcattgtcgatactgagagcaagtcttctgttattgacgaggctttcaaacttcacattccaattgtcgctcttgttgattctgctatgcctctccata |
55329537 |
T |
|
| Q |
319 |
ctttcagccgcattgcttatcccattcccgttaacccctctgttcaatttgtctatcttttctgtaatttgattaccaaaacactgcttctcgagaag-- |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55329538 |
ctttcagccgcattgcttatcccattcccgttaacccctctgttcaatttgtctatcttttctgtaatttgattaccaaaacactgcttctcgagaagaa |
55329637 |
T |
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| Q |
417 |
----aagaacaacaactctaatatcaaacttcttgatgatg |
453 |
Q |
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|| |||||||||||||||||||||||||||||||||| |
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| T |
55329638 |
caacaacaacaacaactctaatatcaaacttcttgatgatg |
55329678 |
T |
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