View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16845_low_5 (Length: 444)
Name: NF16845_low_5
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16845_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 24 - 433
Target Start/End: Original strand, 38406865 - 38407274
Alignment:
| Q |
24 |
tagcttaaagatcagctctcagttcttcagaaagagaaatccacctgctttctgcctcagtccatttaattcttgttcaagttttacttcaaaactgtct |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38406865 |
tagcttaaagatcagctctcagttcttcagaaagagaaatccacctgctttctgcctcagtccatttaattcttgttcaagttttacttcaaaactgtct |
38406964 |
T |
|
| Q |
124 |
ttgattgatgcttgaaatccacaaggattatttttcttctcagtaagttgagccaaatcttgatcagcaatgttcattttgttgtgatctccagatacaa |
223 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
38406965 |
ttgattgatgcttgaaatccacaaggattatttttcttctcagtaagttgagccaaatcttgatcagcaatgttcattttgttgtgatttcctgatacaa |
38407064 |
T |
|
| Q |
224 |
aatttacttgaacgtggtcttcaacatcttcctcgtcaatctccatctcctcatcaccatcttcatcaacacagcataatgatggcggtctattaaggct |
323 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38407065 |
aatttacttgaacgtggtcttcaacatcttcctcgtcaatctccatctcctcatcaccatcttcatcaacacagcataatgatgacggtctattaaggct |
38407164 |
T |
|
| Q |
324 |
aaactgtaatatgttcaagctttttcggacccaagctgctgaatgacctccacttggatccattggattgtcaccattttctttaatttgatgcagttca |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38407165 |
aaactgtaatatgttcaagctttttcggacccaagctgctgaatgacctccacttggatccattggattgtcaacattttctttaatttgatgcagttca |
38407264 |
T |
|
| Q |
424 |
tcctgttcat |
433 |
Q |
| |
|
|||||||||| |
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| T |
38407265 |
tcctgttcat |
38407274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 147 - 429
Target Start/End: Complemental strand, 38292563 - 38292281
Alignment:
| Q |
147 |
aggattatttttcttctcagtaagttgagccaaatcttgatcagcaatgttcattttgttgtgatctccagatacaaaatttacttgaacgtggtcttca |
246 |
Q |
| |
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||||||| |||||| |||| | ||||| ||||||| |||| |||||||||| ||||||| || | | |||||||||||||||||| | ||||||||| |
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| T |
38292563 |
aggattaattttctcctcactgggttgaaccaaatccatatcatcaatgttcatcttgttgtcattttctgatacaaaatttacttgatcatggtcttca |
38292464 |
T |
|
| Q |
247 |
acatcttcctcgtcaatctccatctcctcatcaccatcttcatcaacacagcataatgatggcggtctattaaggctaaactgtaatatgttcaagcttt |
346 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
38292463 |
acatcttcctctgcaatctccatctcctcatcaccatcttcatcaacactgcataatggtggtggtctattaaggctagactgtaatatgttcaagcttt |
38292364 |
T |
|
| Q |
347 |
ttcggacccaagctgctgaatgacctccacttggatccattggattgtcaccattttctttaatttgatgcagttcatcctgt |
429 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
38292363 |
ttcggacccaagctgctgaatgacctccacttgggtccaatggattgtaaccattttctttaattcgatgcagttcatcctgt |
38292281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 38294177 - 38294058
Alignment:
| Q |
24 |
tagcttaaagatcagctctcagttcttcagaaagagaaatccacctgctttctgcctcagtccatttaat----tcttgttcaagttttacttcaaaact |
119 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
38294177 |
tagcttcaagatcggctctcagttcttcagaaagagaaatccacctgctttctgcctcattccatttaattctttcttgttcaagttttacttcaaaact |
38294078 |
T |
|
| Q |
120 |
gtctttgattgatgcttgaa |
139 |
Q |
| |
|
|||||||| ||||||||||| |
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|
| T |
38294077 |
gtctttgactgatgcttgaa |
38294058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 34940971 - 34941052
Alignment:
| Q |
35 |
tcagctctcagttcttcagaaagagaaatccacctgctttctgcctcagtccatttaattct----tgttcaagttttactt |
112 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| | |||| |||||||||||||||| |
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| T |
34940971 |
tcagctctgagttcttcggaaagggaaatccacctgctttctgcctcagtccattcacttctttcctgttcaagttttactt |
34941052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 34942546 - 34942596
Alignment:
| Q |
244 |
tcaacatcttcctcgtcaatctccatctcctcatcaccatcttcatcaaca |
294 |
Q |
| |
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|||||| | |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
34942546 |
tcaacaccatcctcgacaatctccatctcctcgtcaccatcttcatcaaca |
34942596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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