View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16845_low_6 (Length: 438)
Name: NF16845_low_6
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16845_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 25 - 408
Target Start/End: Original strand, 32522983 - 32523369
Alignment:
| Q |
25 |
agttgcattttaggatgattccaaaagaagcaaagataatcatcaaaagagttgcattttaggatgaccaagaaaagtgcacgaggactgaattgtgtgt |
124 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||| || | | || |||||||||||||||||||||||||||||||||| | |
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| T |
32522983 |
agttacattttaggatgattccaaaagaagcaaagataatcatcacaagtattcctctctatagtgaccaagaaaagtgcacgaggactgaattgtgtat |
32523082 |
T |
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| Q |
125 |
ttgttatcttgt--gccnnnnnnnnnnnnnntagaagcggatagtacaatcatcaatgggaca--taaagctagcttttttgacctaacaaaaccagctg |
220 |
Q |
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|||||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
32523083 |
ttgttatcttgtttgtgccaaacacaaaaaatagaagcggatagtacaatcatcaaggggacacataaagctagcttttttgaccttacaaaaccagctg |
32523182 |
T |
|
| Q |
221 |
gtacatatctataggactaagttatctaaacaattcttgaaggtccactcttcaaaataatcctattccaaaaagaagnnnnnnnnncattgatcattct |
320 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |
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| T |
32523183 |
gtacatatctttaggactaagttatctaaacatttcttgaaggtccactcttcaagataatcctgttccaaaaagaag-aaaaaaaacattgatcattct |
32523281 |
T |
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| Q |
321 |
tcaccaccttggtttcctgggccttgcaacaaaaacacaacaattcctcatattagtacttatcctagggatgaacgaacataagagt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32523282 |
tcaccaccttggtttcctgggccttgcaacaaaaacacaacaattcctcatattagtacttatcctagggatgaacgaacataagagt |
32523369 |
T |
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