View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16845_low_7 (Length: 399)
Name: NF16845_low_7
Description: NF16845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16845_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 73 - 382
Target Start/End: Original strand, 37614639 - 37614950
Alignment:
| Q |
73 |
acaacatttacagtcaaaacatgcaaatatttgatcacaagctaccnnnnnnnta-ttcatcaaatttgtatctcatgtgtttgttgaaatgcttgagaa |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37614639 |
acaacatttacagtcaaaacatgcaaatatttgatcacaagctaccaacaaaaaaattcatcaaatttgtatctcatgtgtttgttgaaatgcttgagaa |
37614738 |
T |
|
| Q |
172 |
gaactcactttgtgttttgagtaggaggcttacaactgtaggaggctcaccaaattaagttttctctcggcctcacaaattggttacttatcaa-atgtg |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37614739 |
gaactcactttgtgttttgagtaggaggcttacgactgtaggaggctcaccaaattaagttttctctcggcctcacaaattggttacttatcaatatgtg |
37614838 |
T |
|
| Q |
271 |
gttgatttggcccacctataatcgaattaagccaacacctgcaaatatctttgtttgtagatggatgacattaaaactgtggatctcacactatcattga |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37614839 |
gttgatttggcccacctataatcgaattaagccaacacctgcaaatatctttgtttgtagatggatgacattaaaactgtggatctcatactatcattga |
37614938 |
T |
|
| Q |
371 |
catcaaaccttg |
382 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37614939 |
catcaaaccttg |
37614950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 37614424 - 37614501
Alignment:
| Q |
1 |
cttgagtctatcggagctgatcatggtctgtctatctagcatgcgactatctgggttgttagccatatttacacaaca |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37614424 |
cttgagtctatcggagctgatcatggtctgtctatctagcatgcgactatctgggttgttagccatatttacacaaca |
37614501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University