View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16846_low_2 (Length: 232)
Name: NF16846_low_2
Description: NF16846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16846_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 35478813 - 35479029
Alignment:
| Q |
24 |
attatctcattccagggcttccaaccccc-ttgaaatttagagttagagacacttgcttctccctttcacactttcggtataata--------------- |
107 |
Q |
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| T |
35478813 |
attatctcgttccagggcttccaaccccccttgaaatttagagttagagacacttgcttctccctttcacactttcggtataataatgcacaaggccaat |
35478912 |
T |
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| Q |
108 |
-tccatgctccttgctcttatatatagcagtgtttcacattgaagagcaacatcatcattacataaaaggcaataaccagtgccttggttaacatcatat |
206 |
Q |
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|| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35478913 |
atcaatgctccttgatcttatatatagcagcgtttcacattgaagagcaacatcatcattacataaaaggcaataaccagtgccttggtt-acatcatat |
35479011 |
T |
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| Q |
207 |
tctatgcagcagatgatg |
224 |
Q |
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|||||||||||||||||| |
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| T |
35479012 |
tctatgcagcagatgatg |
35479029 |
T |
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