View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16847_high_3 (Length: 314)
Name: NF16847_high_3
Description: NF16847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16847_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 1624078 - 1623781
Alignment:
| Q |
7 |
gaaagatagagactggaaaaataaaatcaatctacatgtatctttgtgtaaatcagtgctgaaaagccctatttagttttttctagttttaaagccctaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1624078 |
gaaagatagagactggaaaaataaaatcaatctacatgtatctttgtgtaaatcagtgttgaaaagccctatttagttttttctagttttaaagccctaa |
1623979 |
T |
|
| Q |
107 |
aattcaatagtaaatcagtgttgaaaattagatgtcacggaaatgtgctctttatatcatagctatatatgatattcataagtgtctaatggctttcttg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
1623978 |
aattcaatagtaaatcagtgttgaaaattagatgtcatggaaatgtgctctttatatcatagctatatatgatattcataattctctaatggctttcttg |
1623879 |
T |
|
| Q |
207 |
caacttgtctagcacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttctcttgaatcttttaaatttaggcattgatg |
304 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1623878 |
caacttgtctaacacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttctcttgaatcttttaaattcaggcattgatg |
1623781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 93 - 304
Target Start/End: Complemental strand, 1606873 - 1606659
Alignment:
| Q |
93 |
ttttaaagccctaaaattcaatagtaaatcagtgttgaaaattagatgtcacggaaatgtgctctttatatcatagctatatatgatattcataagtgtc |
192 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
1606873 |
ttttaaagccctaaaattcaatactaaatcagtgtttaaaactagttgtcacggaaatgtgctctttatatcataggtatatatgatattcatactggtc |
1606774 |
T |
|
| Q |
193 |
taatggctttcttgcaacttgtctagcacgaacactt--tagagtttagaatgttatttatagtttctaa-tttttacatatttctcttgaatcttttaa |
289 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
1606773 |
taatggctttcttgcaacttatgtagcacgaacactttatagagtttagattgttatttatagtttctaattttttacatatttctcttggatcatttaa |
1606674 |
T |
|
| Q |
290 |
atttaggcattgatg |
304 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
1606673 |
atttaggtattgatg |
1606659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 216 - 304
Target Start/End: Complemental strand, 18781563 - 18781475
Alignment:
| Q |
216 |
tagcacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttctcttgaatcttttaaatttaggcattgatg |
304 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18781563 |
tagcacggacactttagagtttagattgttatttatagtttctaatttttacatatttctcttgaatcttttaaattcaggcattgatg |
18781475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University