View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16847_high_4 (Length: 258)

Name: NF16847_high_4
Description: NF16847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16847_high_4
NF16847_high_4
[»] scaffold0024 (2 HSPs)
scaffold0024 (10-140)||(11586-11716)
scaffold0024 (152-243)||(12724-12815)
[»] chr6 (5 HSPs)
chr6 (164-242)||(33766797-33766875)
chr6 (148-239)||(4500308-4500399)
chr6 (148-239)||(15823860-15823951)
chr6 (148-227)||(34309854-34309933)
chr6 (164-237)||(34066971-34067044)
[»] chr3 (1 HSPs)
chr3 (164-242)||(35519223-35519301)
[»] scaffold1049 (1 HSPs)
scaffold1049 (148-239)||(2369-2460)
[»] chr7 (3 HSPs)
chr7 (148-239)||(26085253-26085344)
chr7 (148-239)||(26109040-26109131)
chr7 (190-239)||(19741107-19741156)
[»] chr5 (4 HSPs)
chr5 (148-239)||(550842-550933)
chr5 (148-239)||(30281254-30281345)
chr5 (164-241)||(20324045-20324122)
chr5 (154-243)||(16990843-16990932)
[»] chr8 (2 HSPs)
chr8 (173-242)||(12477502-12477571)
chr8 (178-230)||(4169055-4169106)
[»] chr1 (2 HSPs)
chr1 (153-230)||(23969947-23970024)
chr1 (164-241)||(32612457-32612534)
[»] chr2 (2 HSPs)
chr2 (149-243)||(20483678-20483772)
chr2 (150-239)||(23680839-23680928)


Alignment Details
Target: scaffold0024 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 11586 - 11716
Alignment:
Q  10 attattctcatgaaacttaaaagtgaaactagaaaacacattattaactttgtttcttacattgaaaaccaatttaatactaatcttaagtgtttaagaa 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  11586 attattctcataaaacttaaaagtgaaactagaaaacacattattaactttgtttcttacattgaaaaccaatttaatatcaatcttaagtgtttaagaa 11685  T
Q  110 gtgataatggatgtgaatttcttatgactga 140  Q
    |||||||| ||||||||||||||||||||||    
T  11686 gtgataatagatgtgaatttcttatgactga 11716  T

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Target: scaffold0024; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 12724 - 12815
Alignment:
Q  152 ctaaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgttgct 243  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12724 ctaaagggatccttcatcaaagatcttgtgttgaatcccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgttgct 12815  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 33766797 - 33766875
Alignment:
Q  164 ttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgttgc 242  Q
    |||||||  ||||||||||||||  ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||    
T  33766797 ttcatcatcgatcttgtgttgaaatccctcaacaaaatggcattgttgagcggaaacatcaacacatccttaatgttgc 33766875  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 4500308 - 4500399
Alignment:
Q  148 ctttctaaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgt 239  Q
    ||||||||||| ||| |||||||||| |||||||||||    |||||||||||||| ||||| || ||||| |||||||| || ||||||||    
T  4500308 ctttctaaaggcatcattcatcaaaggtcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaacatatccttaatgt 4500399  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 15823860 - 15823951
Alignment:
Q  148 ctttctaaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgt 239  Q
    ||||||||||| ||| |||||||||| |||||||||||    |||||||||||||| ||||| || ||||| |||||||| || ||||||||    
T  15823860 ctttctaaaggcatcattcatcaaaggtcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaacatatccttaatgt 15823951  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 34309854 - 34309933
Alignment:
Q  148 ctttctaaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaaca 227  Q
    ||||||||||| ||| |||||||||| |||||||||||    |||||||||||||| ||||| || ||||| ||||||||    
T  34309854 ctttctaaaggtatcattcatcaaaggtcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaaca 34309933  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 34066971 - 34067044
Alignment:
Q  164 ttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaat 237  Q
    ||||||| ||||||||||||||    |||||||||||||| |  |||||||| ||||| ||||| |||||||||    
T  34066971 ttcatcatagatcttgtgttgagacacctcaacaaaatggtagggttgagagaaaacaccaacatattcttaat 34067044  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 35519301 - 35519223
Alignment:
Q  164 ttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgttgc 242  Q
    |||||||  ||||||||||||||  ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||    
T  35519301 ttcatcattgatcttgtgttgaaacccctcaacaaaatggcattgttgagcggaaacatcaacacatccttaatgttgc 35519223  T

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Target: scaffold1049 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 2460 - 2369
Alignment:
Q  148 ctttctaaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgt 239  Q
    ||||||||||| ||| |||||||||| |||||||||||    |||||||||||||| ||||| || ||||| |||||||| || ||||||||    
T  2460 ctttctaaaggtatcattcatcaaaggtcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaacatatccttaatgt 2369  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 26085344 - 26085253
Alignment:
Q  148 ctttctaaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgt 239  Q
    ||||||||||| ||| |||||||||| |||||||||||    |||||||||||||| ||||| || ||||| |||||||| || ||||||||    
T  26085344 ctttctaaaggcatcattcatcaaaggtcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaacatatccttaatgt 26085253  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 26109131 - 26109040
Alignment:
Q  148 ctttctaaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgt 239  Q
    ||||||||||| ||| |||||||||| |||||||||||    |||||||||||||| ||||| || ||||| |||||||| || ||||||||    
T  26109131 ctttctaaaggcatcattcatcaaaggtcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaacatatccttaatgt 26109040  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 19741107 - 19741156
Alignment:
Q  190 cctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgt 239  Q
    ||||||||||||||  ||||||| || || ||||||||||||||||||||    
T  19741107 cctcaacaaaatggggttgttgaaagaaagcatcaacacattcttaatgt 19741156  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 550933 - 550842
Alignment:
Q  148 ctttctaaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgt 239  Q
    ||||||||||| ||| |||||||||| |||||||||||    |||||||||||||| ||||| || ||||| |||||||| || ||||||||    
T  550933 ctttctaaaggcatcattcatcaaaggtcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaacatatccttaatgt 550842  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 30281345 - 30281254
Alignment:
Q  148 ctttctaaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgt 239  Q
    ||||||||||| ||| |||||||||| |||||||||||    |||||||||||||| ||||| || ||||| |||||||| || ||||||||    
T  30281345 ctttctaaaggcatcattcatcaaaggtcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaacatatccttaatgt 30281254  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 20324122 - 20324045
Alignment:
Q  164 ttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgttg 241  Q
    ||||||||| |||||||||||||   |||||||||||||| |  |||||||||||||||||||| ||| | |||||||    
T  20324122 ttcatcaaaaatcttgtgttgaaactcctcaacaaaatggtagagttgagaggaaacatcaacatattttgaatgttg 20324045  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 16990932 - 16990843
Alignment:
Q  154 aaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgttgct 243  Q
    ||||| ||| ||||||||||| ||||||| |||   ||| |||||||||  |  || ||||| ||||||||||||||||| |||||||||    
T  16990932 aaaggcatcattcatcaaagagcttgtgtagaaacacctgaacaaaatgctagagtagagagaaaacatcaacacattctcaatgttgct 16990843  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 12477571 - 12477502
Alignment:
Q  173 gatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgttgc 242  Q
    ||||||||||||||  || |||||||||||| ||||||||| ||| ||||||||| || |||||||||||    
T  12477571 gatcttgtgttgaaacccttcaacaaaatggcattgttgagcggatacatcaacaaatccttaatgttgc 12477502  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 4169106 - 4169055
Alignment:
Q  178 tgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacat 230  Q
    |||||||||| ||||||||||||||  |||||||| |||||||||||||||||    
T  4169106 tgtgttgaat-ccctcaacaaaatgacattgttgaaaggaaacatcaacacat 4169055  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 23969947 - 23970024
Alignment:
Q  153 taaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacat 230  Q
    |||||||||| | |||||  |||||||| ||| |  ||||||||||||||  |||||||||||||| |||||||||||    
T  23969947 taaagggatcttacatcattgatcttgttttgtaacccctcaacaaaatgagattgttgagaggaatcatcaacacat 23970024  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 32612534 - 32612457
Alignment:
Q  164 ttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgttg 241  Q
    |||||||||  || |||||||||   |||||||||||||| |  ||||||||||||||||| || |||||||||||||    
T  32612534 ttcatcaaaagtcatgtgttgaaactcctcaacaaaatggcagagttgagaggaaacatcagcatattcttaatgttg 32612457  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 20483772 - 20483678
Alignment:
Q  149 tttctaaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgttgct 243  Q
    |||| ||||| ||| ||||||||||| ||||||| |||   ||| |||||||||  |  || ||||| ||||||||||||||||| |||||||||    
T  20483772 tttcaaaaggcatcattcatcaaagagcttgtgtagaaacacctgaacaaaatgctagagtagagagaaaacatcaacacattctcaatgttgct 20483678  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 23680839 - 23680928
Alignment:
Q  150 ttctaaagggatccttcatcaaagatcttgtgttgaataccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgt 239  Q
    ||||||||| ||  ||||||| |||||||||||||||   |||||||||||||  |  ||||| || ||||||||||| || ||||||||    
T  23680839 ttctaaaggcattattcatcatagatcttgtgttgaaacacctcaacaaaatgccagagttgaaagaaaacatcaacatatccttaatgt 23680928  T

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