View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16847_low_1 (Length: 597)

Name: NF16847_low_1
Description: NF16847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16847_low_1
NF16847_low_1
[»] chr1 (6 HSPs)
chr1 (311-581)||(38900491-38900761)
chr1 (312-581)||(38898353-38898622)
chr1 (219-310)||(41306688-41306780)
chr1 (253-311)||(5351765-5351823)
chr1 (239-308)||(13414162-13414231)
chr1 (275-311)||(51353162-51353198)
[»] chr3 (3 HSPs)
chr3 (1-310)||(50210887-50211188)
chr3 (240-310)||(23091811-23091881)
chr3 (231-310)||(27117682-27117761)
[»] chr6 (3 HSPs)
chr6 (228-310)||(26603541-26603623)
chr6 (214-310)||(6126459-6126556)
chr6 (239-310)||(13832480-13832551)
[»] chr7 (6 HSPs)
chr7 (228-311)||(32005847-32005930)
chr7 (240-311)||(34152951-34153022)
chr7 (240-311)||(34174102-34174173)
chr7 (272-310)||(22054929-22054967)
chr7 (231-311)||(10656251-10656331)
chr7 (274-310)||(42729884-42729920)
[»] chr8 (4 HSPs)
chr8 (228-310)||(41525184-41525266)
chr8 (241-310)||(3895518-3895587)
chr8 (239-312)||(42424137-42424210)
chr8 (239-311)||(31464958-31465030)
[»] chr4 (2 HSPs)
chr4 (261-311)||(50860388-50860438)
chr4 (272-311)||(7501992-7502031)
[»] scaffold0445 (1 HSPs)
scaffold0445 (236-310)||(6442-6516)
[»] chr2 (2 HSPs)
chr2 (206-310)||(39843116-39843221)
chr2 (274-310)||(15721066-15721102)
[»] scaffold0062 (1 HSPs)
scaffold0062 (274-310)||(69623-69659)
[»] scaffold0494 (1 HSPs)
scaffold0494 (239-310)||(583-654)
[»] chr5 (1 HSPs)
chr5 (229-311)||(27184388-27184470)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 311 - 581
Target Start/End: Complemental strand, 38900761 - 38900491
Alignment:
Q  311 gcctcaccagtcaccacctcattctccctcccatgccatgctctcccatttcatgaactaatttatttaaatcttgtggttattaactaaagtgttcatg 410  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38900761 gcctcaccagtcaccacctccttctccctcccatgccatgctctcccatttcatgaactaatttatttaaatcttgtggttattaactaaagtgttcatg 38900662  T
Q  411 atgcccaaacaattaccacccaaatcaaatagagtacttgaatcccgagaaaatggcatttcaactccaggagatttcacaaaagcatcctcacatgtag 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38900661 atgcccaaacaattaccacccaaatcaaatagagtacttgaatcccgagaaaatggcatttcaactccaggagatttcacaaaagcatcctcacatgtag 38900562  T
Q  511 ttttgtaagatatcacagaactgaacttgtaaaaagagtccacgacattgtgttgtccaagtaactcaact 581  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38900561 ttttgtatgatatcacagaactgaacttgtaaaaagagtccacgacattgtgttgtccaagtaactcaact 38900491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 312 - 581
Target Start/End: Complemental strand, 38898622 - 38898353
Alignment:
Q  312 cctcaccagtcaccacctcattctccctcccatgccatgctctcccatttcatgaactaatttatttaaatcttgtggttattaactaaagtgttcatga 411  Q
    |||||||||||| |||||  |||||||||||||| |||| ||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||    
T  38898622 cctcaccagtcatcaccttcttctccctcccatgtcatgatctcccatttcatgaaccaattaatttaaaacttgtggttattaactaaagtgttcatga 38898523  T
Q  412 tgcccaaacaattaccacccaaatcaaatagagtacttgaatcccgagaaaatggcatttcaactccaggagatttcacaaaagcatcctcacatgtagt 511  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38898522 tgcccaaacaattaccacccaaatcaaatagagtacgtgaatcctgagaaaatggtatttcaactccaggagatttcacaaaagcatcctcacatgtagt 38898423  T
Q  512 tttgtaagatatcacagaactgaacttgtaaaaagagtccacgacattgtgttgtccaagtaactcaact 581  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38898422 tttgtatgatatcacagaactgaacttgtaaaaagagtccacgacattgtgttgtccaagtaactcaact 38898353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 41306780 - 41306688
Alignment:
Q  219 ccggttcaacccggttgaatccc-ggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttg 310  Q
    ||||||| |||||||| || ||| |||||||||  |||||||  |||||||   || ||||||||  ||||||||||||||||||||||||||    
T  41306780 ccggttcgacccggttcaacccccggttgaacctctaaaccttaaacccatgcctataccggtttattgtccggtccggttttgattaccttg 41306688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 5351765 - 5351823
Alignment:
Q  253 taaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttgg 311  Q
    ||||||| ||||||||| || ||||||||  ||||||| | ||||||||||||||||||    
T  5351765 taaaccttgaacccataagttcaccggttcaatgtccgattcggttttgattaccttgg 5351823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 13414231 - 13414162
Alignment:
Q  239 cccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattacct 308  Q
    |||||||||||| || ||||  |||||||||  || |||||||| |  ||||||||||||||||||||||    
T  13414231 cccggttgaacctttgaaccctgaacccatatttagaccggtttaaactccggtccggttttgattacct 13414162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 51353198 - 51353162
Alignment:
Q  275 accggttttatgtccggtccggttttgattaccttgg 311  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  51353198 accggtttgatgtccggtccggttctgattaccttgg 51353162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 50211188 - 50210887
Alignment:
Q  1 tataataaactaaaagagtttttt-aagaagaaactaaaggagttgtatgtattaattcacatgattattcgtaaaaaatattatatcattttaattttt 99  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50211188 tataagaaactaaaagagtttttttaagaagaaactaaaagagttgtatgtattaattcacatgattattcgtaaaaaatattatatcattttaattttt 50211089  T
Q  100 aataagcatgggaaattgttgaatgagtttaagtttcagtagtgtaaaatatgaataatatataattttgtatgttattgttttatataatgat--nnnn 197  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  50211088 aataagtatgggaaattgttgaatgagtttaagtttcagtactgtaaaatatgaataatatataattttgtatgttattgttttatataatgataaaaaa 50210989  T
Q  198 nnnntacatatttaactaaaaccggttcaacccggttgaatcccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggt 297  Q
        |||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||| |||||||||||||||||||||||    
T  50210988 aaaatacatatttaactaaaaccggttcaacccggttgaat-----------ccttaaacctcgaacccataggtataccggttttatgtccggtccggt 50210900  T
Q  298 tttgattaccttg 310  Q
    |||||||||||||    
T  50210899 tttgattaccttg 50210887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 23091811 - 23091881
Alignment:
Q  240 ccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttg 310  Q
    ||||||||||||  ||||||  |||||||   ||||||||||| |||||||||||||||||||||||||||    
T  23091811 ccggttgaaccccaaaaccttaaacccatgcctacaccggtttaatgtccggtccggttttgattaccttg 23091881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 27117761 - 27117682
Alignment:
Q  231 ggttgaatcccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttg 310  Q
    ||||||| || |||| |||||||||||||  ||| ||||   |||| ||||| |||||||||||| ||||||||||||||    
T  27117761 ggttgaaccctggttcaacccttaaaccttaaactcataccaacactggtttaatgtccggtccgattttgattaccttg 27117682  T

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Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 228 - 310
Target Start/End: Original strand, 26603541 - 26603623
Alignment:
Q  228 cccggttgaatcccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttg 310  Q
    |||||||||| |||||||| |||||||||||| |||||||||  ||||||||||  ||||||||||||||||| |||||||||    
T  26603541 cccggttgaaccccggttggacccttaaaccttgaacccatacctacaccggttcaatgtccggtccggttttaattaccttg 26603623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 214 - 310
Target Start/End: Complemental strand, 6126556 - 6126459
Alignment:
Q  214 taaaaccggttcaaccc-ggttgaatcccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttg 310  Q
    ||||| ||||||||||| ||||  | |||||||||||| ||||||||| ||| ||||  |  |||||||| ||||||||||||||| |||||||||||    
T  6126556 taaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacacatacctttaccggtttaatgtccggtccggttctgattaccttg 6126459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 13832551 - 13832480
Alignment:
Q  239 cccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttg 310  Q
    ||||||||||||   ||||||  |||||||   ||||||||||| |||||||||||||||||||||||||||    
T  13832551 cccggttgaacctcaaaaccttaaacccatgcctacaccggtttaatgtccggtccggttttgattaccttg 13832480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 32005930 - 32005847
Alignment:
Q  228 cccggttgaatcccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttgg 311  Q
    |||||||||| |||||||  ||| | ||||||||||||||||||||||||||||  ||| ||||| ||||||||||||||||||    
T  32005930 cccggttgaaccccggttcgaccttaaaacctcgaacccataggtacaccggttcaatgaccggttcggttttgattaccttgg 32005847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 34152951 - 34153022
Alignment:
Q  240 ccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttgg 311  Q
    ||||||||||||  ||||||  |||||||   ||||||||||| | ||||||||||||||||||||||||||    
T  34152951 ccggttgaaccccaaaaccttaaacccatgcctacaccggtttaacgtccggtccggttttgattaccttgg 34153022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 34174173 - 34174102
Alignment:
Q  240 ccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttgg 311  Q
    ||||||||||||  ||||||  |||||||   ||||||||||| | ||||||||||||||||||||||||||    
T  34174173 ccggttgaaccccaaaaccttaaacccatgcctacaccggtttaacgtccggtccggttttgattaccttgg 34174102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 22054967 - 22054929
Alignment:
Q  272 tacaccggttttatgtccggtccggttttgattaccttg 310  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  22054967 tacatcggtttaatgtccggtccggttttgattaccttg 22054929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 10656331 - 10656251
Alignment:
Q  231 ggttgaatcccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttgg 311  Q
    ||||||| ||||||  |||| |||||||| |||| |||  | |||||||||  ||| ||||||||||| ||||||||||||    
T  10656331 ggttgaaccccggtccaacctttaaaccttgaactcatgagaacaccggttcaatgcccggtccggttctgattaccttgg 10656251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 42729884 - 42729920
Alignment:
Q  274 caccggttttatgtccggtccggttttgattaccttg 310  Q
    ||||||||| || ||||||||||||||||||||||||    
T  42729884 caccggtttaatatccggtccggttttgattaccttg 42729920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 228 - 310
Target Start/End: Original strand, 41525184 - 41525266
Alignment:
Q  228 cccggttgaatcccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttg 310  Q
    |||||||  |||||||||||||| || || ||||||||| ||  || |||||||| |||||||||||||||| ||||||||||    
T  41525184 cccggttcgatcccggttgaacctttgaagctcgaacccctatctataccggtttaatgtccggtccggtttcgattaccttg 41525266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 3895587 - 3895518
Alignment:
Q  241 cggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttg 310  Q
    |||||||||| |||||||| ||||||||    |||||||||| ||||||||| |||||||||||||||||    
T  3895587 cggttgaacctttaaaccttgaacccatgaacacaccggtttaatgtccggttcggttttgattaccttg 3895518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 42424137 - 42424210
Alignment:
Q  239 cccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttggc 312  Q
    |||||||||||| |||||||||||||||||   |  |||||||| |||| |||||||||| |||||||||||||    
T  42424137 cccggttgaacctttaaacctcgaacccatgcctttaccggtttgatgttcggtccggttctgattaccttggc 42424210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 31464958 - 31465030
Alignment:
Q  239 cccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttgg 311  Q
    |||||||||||| | |||||| ||||||||   |||| |||||  ||||||||||||||||  ||||||||||    
T  31464958 cccggttgaaccttaaaaccttgaacccatgcttacatcggttcaatgtccggtccggtttcaattaccttgg 31465030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 50860388 - 50860438
Alignment:
Q  261 gaacccataggtacaccggttttatgtccggtccggttttgattaccttgg 311  Q
    ||||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  50860388 gaacccatgagtacaccggtttaatgtccggtccggttttgattaccttgg 50860438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 7501992 - 7502031
Alignment:
Q  272 tacaccggttttatgtccggtccggttttgattaccttgg 311  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  7501992 tacaccgatttaatgtccggtccggttttgattaccttgg 7502031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 6516 - 6442
Alignment:
Q  236 aatcccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttg 310  Q
    |||||||||||||||   ||||||  |||||||   ||||| ||||| |||||||||||||||||||||||||||    
T  6516 aatcccggttgaacctcaaaaccttaaacccatgcctacacgggtttaatgtccggtccggttttgattaccttg 6442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 39843221 - 39843116
Alignment:
Q  206 tatttaactaaaaccggttcaacc-cggttgaatcccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgatt 304  Q
    ||||||| |||  |||||| |||| ||||| || |||||||||||||  ||||||  |||||||   |||| |||||| | |||||||||||||||||||    
T  39843221 tatttaattaattccggttgaacctcggttcaaccccggttgaaccccaaaaccttaaacccatgcctacatcggtttaacgtccggtccggttttgatt 39843122  T
Q  305 accttg 310  Q
    ||||||    
T  39843121 accttg 39843116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 15721066 - 15721102
Alignment:
Q  274 caccggttttatgtccggtccggttttgattaccttg 310  Q
    ||||||||| |||||||||||||||||||||||||||    
T  15721066 caccggtttaatgtccggtccggttttgattaccttg 15721102  T

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Target: scaffold0062 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 69623 - 69659
Alignment:
Q  274 caccggttttatgtccggtccggttttgattaccttg 310  Q
    ||||||||| |||||||||||||||||||||||||||    
T  69623 caccggtttaatgtccggtccggttttgattaccttg 69659  T

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Target: scaffold0494 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 654 - 583
Alignment:
Q  239 cccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttg 310  Q
    |||||||||||| || ||||  |||||||||  || |||||||| |  ||||||||||||||||||||||||    
T  654 cccggttgaacctttgaaccctgaacccatatctaaaccggtttaaactccggtccggttttgattaccttg 583  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 27184388 - 27184470
Alignment:
Q  229 ccggttgaatcccggttgaacccttaaacctcgaacccataggtacaccggttttatgtccggtccggttttgattaccttgg 311  Q
    ||||||||| |||||||  |||| |||||||  |||||||   || |||||||  |||||||||||| |||||||||||||||    
T  27184388 ccggttgaaccccggttagacccctaaaccttaaacccatgactataccggttcaatgtccggtccgattttgattaccttgg 27184470  T

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