View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16847_low_2 (Length: 532)
Name: NF16847_low_2
Description: NF16847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16847_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 9 - 514
Target Start/End: Complemental strand, 515533 - 515023
Alignment:
| Q |
9 |
gacatcatcagacaaacatgataaatggaatgatgcatgctactgatcagacgtgtgtgcataagtttttaggtatagtcataagatataaagccaccta |
108 |
Q |
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| T |
515533 |
gacatcatcagacaaacatgataaatggaatgatgcatgctactgatcagacgtgtgtgcataagtttttaggtatagtcataagatataaagccaccta |
515434 |
T |
|
| Q |
109 |
cctgcacggtcaccagcatgaacatccgaaaatacaactaggacaaggccggctatgcaaacaattacaccagttatcttcttgaatctatattttgttt |
208 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
515433 |
ccggcacggtcaccagcatgaacatccgaaaatacaactaggacaaggccagctatgcaaacaattacaccagttatcttcttgaatctatattttgttt |
515334 |
T |
|
| Q |
209 |
tcaagaaaatccatgtaagcagcatgacacatggaatagaccagcagtcaagtagcatcacacttgtaagtgaggtgtattgatatgccttcacaactga |
308 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
515333 |
tcaagaaaatccatgtaagcagcatgacgcatggaatagaccagcagtcaagtagcatcacacttgtaagtgaggtgtattgatatgccttcacaactgt |
515234 |
T |
|
| Q |
309 |
gcataaagtgaaaattgtgctgtaagtgtcattgaaactaagac----nnnnnnnngtcaacataaagctagtttggttaaacttgatgagaatttcaaa |
404 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
515233 |
gcataaggtgaaaattgtgctgtaagtgtcattgaaactaagacaaaaaaaaaaaagtcaacataaagctagtttggttaaacttgatgacaatttcaaa |
515134 |
T |
|
| Q |
405 |
tgattttgaatgttataactgaatgtgtctctcagctgttgaaaacaactcatgcacttgaaattttcca-aaacacctataaacttattaggttttttg |
503 |
Q |
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| T |
515133 |
tgattttgaatgttataactgaatgtgtctctcagttgttgaaaacaactcatgcacttgaacttttccataaacacctataaacttattaggttttttg |
515034 |
T |
|
| Q |
504 |
tcctcataaat |
514 |
Q |
| |
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||||||||||| |
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| T |
515033 |
tcctcataaat |
515023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 62 - 466
Target Start/End: Complemental strand, 530667 - 530265
Alignment:
| Q |
62 |
tgtgtgcataagtttttaggtatagtcataagatataaagccacctacctgcacggtcaccagcatgaacatccgaaaatacaactaggacaaggccggc |
161 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| || |
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| T |
530667 |
tgtgtgcataagtttttaggtatagtcacaagacataaagccacctacctgcacggtcaccggcatgaacatccgaaaatacaaccagaacaaggccagc |
530568 |
T |
|
| Q |
162 |
tatgcaaacaattacaccagttatcttcttgaatctatattttgttttcaagaaaatccatgtaagcagcatgacacatggaatagaccagcagtcaagt |
261 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| || |
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| T |
530567 |
tatgcaaacaattaccccagttatcttcttgaatctatattttgttttcaagaaaatccatgtaagaagcatgacgcatggaatggaccagcagtcaggt |
530468 |
T |
|
| Q |
262 |
agcatcacacttgtaagtgaggtgtattgatatgccttcacaactgagcataaagtgaaaattgtgctgtaagtgtcattgaaactaagacnnnnnnnng |
361 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| | ||||||||||||||||| | |
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| T |
530467 |
agcatcacactagtaagtgaggtgtattgatatgccttcacaactgtacataaggtgaaaattgttctgtta--gtcattgaaactaagacgagaaaaag |
530370 |
T |
|
| Q |
362 |
tcaacataaagctagtttggttaaacttgatgagaatttcaaatgattttgaatgttataactgaatgtgtctctcagctgttgaaaacaactcatgcac |
461 |
Q |
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|||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||| | ||||||||||| || |||||||||| |||||| |
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| T |
530369 |
tcaacataaagctagttttgttaaactttttgacaatttcaaatgattttgagtgttataactaatagtgtctctcagtagtagaaaacaacttatgcac |
530270 |
T |
|
| Q |
462 |
ttgaa |
466 |
Q |
| |
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||||| |
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|
| T |
530269 |
ttgaa |
530265 |
T |
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