View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16847_low_3 (Length: 424)
Name: NF16847_low_3
Description: NF16847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16847_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 135 - 414
Target Start/End: Original strand, 36309784 - 36310069
Alignment:
| Q |
135 |
aataactcatctatttctgttgagacaaaaacttctttagatggtggagaatcaagcattactgattttctttgcatgggagacggtggacaatcttcat |
234 |
Q |
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| T |
36309784 |
aataactcatctatttctgttgagacaaaaacttctttggatggtggagaatcaagcattactgattttctttgcatgggagccggtggacaatcttcat |
36309883 |
T |
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| Q |
235 |
agtctacttttgttatcctgaatattttacccttcggtgtagtgaagc---catcacttagacaaatattttcatcatcaacgtcctctacattaatgtt |
331 |
Q |
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| T |
36309884 |
agtctacttttggtatcctgaatattttaccctttggtgtagtgaagccatcatcacttgaacaaatattttcatcatcaacgtcctctacgttaatgtt |
36309983 |
T |
|
| Q |
332 |
cataacgccttgttctattttgatgcccgaaca---aatagtagtagtattctcagaagacgttttcattgatcttctctcctttg |
414 |
Q |
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| T |
36309984 |
cataacgccttgttctactttgatgcccgaacaagtagtagtagtagtattctcagaagacgttttcattgatcttctctcctttg |
36310069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 36309508 - 36309626
Alignment:
| Q |
20 |
gcacaaagttgtttccaccgttagatcaattaatcttcctgttaaattaaataaaatataatgagatttatttatctaatgatggaagaaaaaacatatg |
119 |
Q |
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| T |
36309508 |
gcacaaagttgtttccaccgttagatcaattaatctccccgttaaattaaataaaatataatgagatttatttatctaatgatggaagaaaaaacatatg |
36309607 |
T |
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| Q |
120 |
cattgttaaagaccaaata |
138 |
Q |
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| T |
36309608 |
catcgttaaagaccaaata |
36309626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 199 - 345
Target Start/End: Original strand, 36308345 - 36308491
Alignment:
| Q |
199 |
attttctttgcatgggagacggtggacaatcttcatagtctacttttgttatcctgaatattttacccttcggtgtagtgaagccatcacttagacaaat |
298 |
Q |
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||||||||||||| |||| ||||||||||| ||||||| ||||||| ||| ||||| || ||||||| |||||| |||||||||||||| |||||| |
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| T |
36308345 |
attttctttgcattggagccggtggacaattgtcatagtgcacttttggtattttgaatcttctaccctttggtgtaatgaagccatcacttgaacaaat |
36308444 |
T |
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| Q |
299 |
attttcatcatcaacgtcctctacattaatgttcataacgccttgtt |
345 |
Q |
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| T |
36308445 |
attttcatcatcaacgtcctctacattaatgttcgtaacgccttgtt |
36308491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 91
Target Start/End: Complemental strand, 4602445 - 4602415
Alignment:
| Q |
61 |
ttaaattaaataaaatataatgagatttatt |
91 |
Q |
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| T |
4602445 |
ttaaattaaataaaatataatgagatttatt |
4602415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 41625519 - 41625588
Alignment:
| Q |
31 |
tttccaccgttagatcaattaatcttcctgttaaattaaataaaatataatgagatttatttatctaatg |
100 |
Q |
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| T |
41625519 |
tttccaccattagatcaataaatttcactattaaattaaataaaatatgatgagattcattgatccaatg |
41625588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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