View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16847_low_6 (Length: 243)
Name: NF16847_low_6
Description: NF16847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16847_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 45129099 - 45128870
Alignment:
| Q |
1 |
gcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatcagatgcaacttacaacatgttcactagagtgtgtaattactctcgtt |
100 |
Q |
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| T |
45129099 |
gcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatcagatgcaacttacaacatgttcactagagtgtgtaattactctcgtt |
45129000 |
T |
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| Q |
101 |
atgtaagtgagtacaatagagactcagtttcacctctttgttcaaaggttatgggattggtgagtaaagaaactagtagatttgtggacaaatatgatgt |
200 |
Q |
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| T |
45128999 |
atgtaagtgagtacaatagagactcagtttcacctctttgttcaaaggttatgggattggtgagtaaagaaactagtagatttgtggacaaatatgatgt |
45128900 |
T |
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| Q |
201 |
cactcttgatgtttgcatttcctctgtgct |
230 |
Q |
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| T |
45128899 |
cactcttgatgtttgcatttcctctgtgct |
45128870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 40280951 - 40280725
Alignment:
| Q |
4 |
actgatttcaattcaagggctgaattcttttggtcacatggactaatatcagatgcaacttacaacatgttcactagagtgtgtaattactctcgttatg |
103 |
Q |
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| T |
40280951 |
actgacttcaattcaagggctgagttcttctggtctcatggattgatatcagattcaacttacaaaatgttcaccgcaggctgcaattattcgcagtatg |
40280852 |
T |
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| Q |
104 |
taagtgagtacaatagagactcagtttcacctctttgttcaaaggttatgggattggtgagtaaagaaactagtagatttgtggacaaatatgatgtcac |
203 |
Q |
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| T |
40280851 |
taagtgagtactatagaaactccatttccctgctttgttcaaaggtcatgagccaagtaagcagagaaaccagcaagtttgtggacaaatatgatgttac |
40280752 |
T |
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| Q |
204 |
tcttgatgtttgcatttcctctgtgct |
230 |
Q |
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| T |
40280751 |
ccttgatgtatgcatttcctcagtgct |
40280725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 6632166 - 6632101
Alignment:
| Q |
163 |
agtaaagaaactagtagatttgtggacaaatatgatgtcactcttgatgtttgcatttcctctgtg |
228 |
Q |
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|||| |||||| || |||||||| ||||| ||||||||||||||||||||||| || || |||||| |
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| T |
6632166 |
agtacagaaacaagcagatttgttgacaagtatgatgtcactcttgatgtttgtatatcttctgtg |
6632101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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