View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16847_low_7 (Length: 242)
Name: NF16847_low_7
Description: NF16847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16847_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 48857157 - 48856950
Alignment:
| Q |
17 |
atatgcaagaaacagaccaacatttatttatttatagacacgacgacatgaaatgttgctgagccaaaacctcaacttctggccacgtcatgatatcacc |
116 |
Q |
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| T |
48857157 |
atatgcaagaaacagaccaac----gtttatttatagacacgacgacatgaaatgttgctgcgccaaaacctcaacttctggccacgtcatgatatcacc |
48857062 |
T |
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| Q |
117 |
ggagcaactccacgacgaatcactctccatcagctccggcaattcaatctcaccccaaaaatcatcttcatcagacacaatgcaacccttctcatccaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48857061 |
ggagcaactccacgacgaatcactctccatcagctccggcaattcaatctcaccccaaaaatcatcttcatcagacacaatgcaacccttctcatccaac |
48856962 |
T |
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| Q |
217 |
gaagccttcatc |
228 |
Q |
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|||||||||||| |
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| T |
48856961 |
gaagccttcatc |
48856950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 9776314 - 9776348
Alignment:
| Q |
148 |
agctccggcaattcaatctcaccccaaaaatcatc |
182 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
9776314 |
agctccggcaactcaatctcaccccaaaaatcatc |
9776348 |
T |
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