View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16848_high_1 (Length: 303)
Name: NF16848_high_1
Description: NF16848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16848_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 45211934 - 45211661
Alignment:
| Q |
21 |
tgtatatcactctacaatactcccactcaaaagttgcaagaaatgataatatcacatctcagtgatctcctcacacataaaatgatcacacacacattcc |
120 |
Q |
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| T |
45211934 |
tgtatatcactctacaatactcctactcaagagttgcaagaaatgataatatcacatctcagtgatctcctcacacataaaatgatcacacacacattcc |
45211835 |
T |
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| Q |
121 |
tctctagacattgttggcgatacatccactcttcacatgatcaaggttggggatgcttcaacttttcacaggtttccttagttacaggacgggatgagac |
220 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45211834 |
tctctatacattgttggcgatacatccactcttcacatggtcaaggttggggatgcttcaacttttcacaggtttccttggttacaggacgggatgagac |
45211735 |
T |
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| Q |
221 |
tctcgttcatgaatatagcatacatagtggacattattatcccacattttcaagtagcttgacttcatctctct |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45211734 |
tctcgttcatgaatatagcatacatagtggacattattatcccacattttcaagtagcttgacttcatttctct |
45211661 |
T |
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