View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16848_high_2 (Length: 302)

Name: NF16848_high_2
Description: NF16848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16848_high_2
NF16848_high_2
[»] chr1 (6 HSPs)
chr1 (1-286)||(47053436-47053721)
chr1 (161-285)||(47063476-47063601)
chr1 (171-255)||(47038755-47038839)
chr1 (210-285)||(47061837-47061912)
chr1 (1-69)||(30557534-30557601)
chr1 (6-65)||(48549004-48549062)
[»] chr7 (6 HSPs)
chr7 (1-121)||(40491608-40491722)
chr7 (71-120)||(45557459-45557508)
chr7 (49-102)||(40728716-40728769)
chr7 (71-136)||(17111939-17112005)
chr7 (84-121)||(1442678-1442715)
chr7 (71-128)||(33853418-33853475)
[»] chr5 (4 HSPs)
chr5 (209-285)||(848815-848891)
chr5 (1-136)||(18637314-18637443)
chr5 (49-93)||(8121613-8121657)
chr5 (1-69)||(38845473-38845543)
[»] chr4 (4 HSPs)
chr4 (7-68)||(16551993-16552053)
chr4 (71-120)||(33843805-33843854)
chr4 (87-124)||(38716698-38716735)
chr4 (24-69)||(45694669-45694713)
[»] chr6 (1 HSPs)
chr6 (1-84)||(947597-947679)
[»] chr3 (1 HSPs)
chr3 (36-69)||(35058124-35058157)
[»] chr2 (1 HSPs)
chr2 (6-51)||(15928461-15928506)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 47053436 - 47053721
Alignment:
Q  1 tttttattctagaattgaattttacactcatttatagtttaactcactttttacatgaatgtatccaaattccaaacaccaatcactttacctccaactc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053436 tttttattctagaattgaattttacactcatttatagtttaactcactttt-acatgaatgtatccaaattccaaacaccaatcactttacctccaactc 47053534  T
Q  101 actattagtcagaatcaatttact-aaaatcaattctagcaacactcgtgatttgtactgttatttatttaattgtgttagttaacaatttcaaaattgg 199  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053535 actattagtcagaatcaatttactcaaaatcaattctagcaacactcgtgatttgtactgttatttatttaattgtgttagttaacaatttcaaaattgg 47053634  T
Q  200 ataatttccagtgagaaatcagctgtgagtcacagtattacatggcttcaccctatagctgccaagaaagttcacattgatggaact 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053635 ataatttccagtgagaaatcagctgtgagtcacagtattacatggcttcaccctatagctgccaagaaagttcacattgatggaact 47053721  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 47063476 - 47063601
Alignment:
Q  161 tatttatttaattgtgttagttaacaatttcaaaattggataatttccagtgagaaatcagctgtgagtcacagtattacat-ggcttcaccctatagct 259  Q
    ||||| ||| ||||||||||| ||| |||||| ||||| || || ||  |||||||||||| ||| |||||| ||||||||| |||||||||||||| ||    
T  47063476 tatttgttttattgtgttagtaaactatttcataattgaatcatctcttgtgagaaatcagatgttagtcacggtattacattggcttcaccctatatct 47063575  T
Q  260 gccaagaaagttcacattgatggaac 285  Q
    |||||||||| |||| ||||||||||    
T  47063576 gccaagaaagctcaccttgatggaac 47063601  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 47038755 - 47038839
Alignment:
Q  171 attgtgttagttaacaatttcaaaattggataatttccagtgagaaatcagctgtgagtcacagtattacatggcttcaccctat 255  Q
    ||||||||||||||| ||||   |||||||||||||||||| |||||||||| || ||| |||||||||| ||||||||||||||    
T  47038755 attgtgttagttaactatttagtaattggataatttccagtcagaaatcagcagttagttacagtattacttggcttcaccctat 47038839  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 47061837 - 47061912
Alignment:
Q  210 gtgagaaatcagctgtgagtcacagtattacatggcttcaccctatagctgccaagaaagttcacattgatggaac 285  Q
    ||||||||||||| | ||||||| |||| |  |||||||||||||||| ||||||||||||||| ||| |||||||    
T  47061837 gtgagaaatcagccgcgagtcactgtataaattggcttcaccctatagatgccaagaaagttcatattaatggaac 47061912  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30557534 - 30557601
Alignment:
Q  1 tttttattctagaattgaattttacactcatttatagtttaactcactttttacatgaatgtatccaaa 69  Q
    |||| ||||||||||||| ||| ||||  |||||||||| ||||||| ||||| |||||||||||||||    
T  30557534 ttttgattctagaattgattttcacacaaatttatagttcaactcac-ttttatatgaatgtatccaaa 30557601  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 48549062 - 48549004
Alignment:
Q  6 attctagaattgaattttacactcatttatagtttaactcactttttacatgaatgtatc 65  Q
    ||||||||||||| ||||| |||||||||| ||| ||||||| |||||||| ||||||||    
T  48549062 attctagaattgatttttaaactcatttattgttcaactcac-ttttacataaatgtatc 48549004  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 40491608 - 40491722
Alignment:
Q  1 tttttattctagaattgaattttacactca--tttatagtttaactcactttttacatgaatgtatccaaattccaaacaccaatcactttacctccaac 98  Q
    |||| ||||||||||||| |||||||| ||  |||| |||||||||||||||| ||||||||||||||||     ||| |  ||||||||||||| ||||    
T  40491608 ttttgattctagaattgacttttacacacaaatttaaagtttaactcactttt-acatgaatgtatccaa-----aaata--aatcactttaccttcaac 40491699  T
Q  99 tcactattagtcagaatcaattt 121  Q
    ||||| ||||||| |||||||||    
T  40491700 tcacttttagtcaaaatcaattt 40491722  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 45557459 - 45557508
Alignment:
Q  71 tccaaacaccaatcactttacctccaactcactattagtcagaatcaatt 120  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  45557459 tccaaacacaaatcactttaccttcaactcacttttagtcagaatcaatt 45557508  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 40728716 - 40728769
Alignment:
Q  49 ttttacatgaatgtatccaaattccaaacaccaatcactttacctccaactcac 102  Q
    ||||| ||| ||||||||||||||||||||  ||||||||||||| ||||||||    
T  40728716 ttttagatgtatgtatccaaattccaaacataaatcactttaccttcaactcac 40728769  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 17111939 - 17112005
Alignment:
Q  71 tccaaacaccaatcactttacctccaactcactattagtcagaatcaatttact-aaaatcaattct 136  Q
    ||||||||| ||||||||||||| ||| ||| | ||||||| |||||||| ||| ||||||||||||    
T  17111939 tccaaacacaaatcactttacctacaattcaattttagtcaaaatcaattcactcaaaatcaattct 17112005  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 1442678 - 1442715
Alignment:
Q  84 cactttacctccaactcactattagtcagaatcaattt 121  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  1442678 cactttacctgcaactcacttttagtcagaatcaattt 1442715  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 33853475 - 33853418
Alignment:
Q  71 tccaaacaccaatcactttacctccaactcactattagtcagaatcaatttactaaaa 128  Q
    ||||||||  |||||||||| || ||||||||| |||| ||||||||||| |||||||    
T  33853475 tccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaa 33853418  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 848891 - 848815
Alignment:
Q  209 agtgagaaatcagctgtgagtcacagtattacatggcttcaccctatagctgccaagaaagttcacattgatggaac 285  Q
    |||||||||||||| || |||||||| || ||||||||||| |||||| |||||||  ||||||| ||| |||||||    
T  848891 agtgagaaatcagcagttagtcacagcatcacatggcttcatcctatatctgccaaacaagttcatattcatggaac 848815  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 18637314 - 18637443
Alignment:
Q  1 tttttattctagaattgaattttacactcatttatagtttaactcactttttacatgaatgtatccaaattccaaacaccaatcactttacctccaactc 100  Q
    |||| ||||||||||||| |||||||| ||||||||||| |||||| |||| | | |||| ||       ||||||||| ||||||| |||   ||||||    
T  18637314 ttttgattctagaattgatttttacacacatttatagttcaactcaattttaaaaagaatcta-------tccaaacacaaatcactgtactctcaactc 18637406  T
Q  101 actattagtcagaatcaatttact-aaaatcaattct 136  Q
    ||| ||||| |||||||||| ||| ||||||||||||    
T  18637407 acttttagttagaatcaattcactcaaaatcaattct 18637443  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 8121613 - 8121657
Alignment:
Q  49 ttttacatgaatgtatccaaattccaaacaccaatcactttacct 93  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||    
T  8121613 ttttacatgaatgtatccaaagtccaaacataaatcactttacct 8121657  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38845473 - 38845543
Alignment:
Q  1 tttttattctagaattgaattttacactca--tttatagtttaactcactttttacatgaatgtatccaaa 69  Q
    |||| ||||||||||||| ||| |||| ||  | ||||||| |||||||||||||||||||| ||||||||    
T  38845473 ttttgattctagaattgattttcacacacaaatatatagttaaactcactttttacatgaatatatccaaa 38845543  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 16551993 - 16552053
Alignment:
Q  7 ttctagaattgaattttacactcatttatagtttaactcactttttacatgaatgtatccaa 68  Q
    |||||||||||| ||| ||||  |||||||||| ||||||| ||||||||||||||||||||    
T  16551993 ttctagaattgattttcacacaaatttatagttcaactcac-ttttacatgaatgtatccaa 16552053  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 33843805 - 33843854
Alignment:
Q  71 tccaaacaccaatcactttacctccaactcactattagtcagaatcaatt 120  Q
    ||||||||  ||||||||||| ||||||||||| |||| |||||||||||    
T  33843805 tccaaacataaatcactttacatccaactcacttttagccagaatcaatt 33843854  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 38716698 - 38716735
Alignment:
Q  87 tttacctccaactcactattagtcagaatcaatttact 124  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  38716698 tttacctgcaactcactcttagtcagaatcaatttact 38716735  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 45694669 - 45694713
Alignment:
Q  24 acactcatttatagtttaactcactttttacatgaatgtatccaaa 69  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||    
T  45694669 acacacatttatagttgaactca-tttttacatgaatgtatccaaa 45694713  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 947597 - 947679
Alignment:
Q  1 tttttattctagaattgaattttacactcatttatagtttaactcactttttacatgaatgtatccaaattccaaacaccaatc 84  Q
    |||| ||||||||||||| | ||| || || ||||| || ||||||||||| |||||||||||||| || ||||||||| ||||    
T  947597 ttttgattctagaattgattcttaaacacaattataattcaactcactttt-acatgaatgtatcctaagtccaaacacaaatc 947679  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 35058124 - 35058157
Alignment:
Q  36 agtttaactcactttttacatgaatgtatccaaa 69  Q
    |||| |||||||||||||||||||||||||||||    
T  35058124 agttcaactcactttttacatgaatgtatccaaa 35058157  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 15928506 - 15928461
Alignment:
Q  6 attctagaattgaattttacactcatttatagtttaactcactttt 51  Q
    ||||||||||||| | |||||| |||||| ||||||||||||||||    
T  15928506 attctagaattgattcttacacacatttaaagtttaactcactttt 15928461  T

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