View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16848_low_3 (Length: 235)
Name: NF16848_low_3
Description: NF16848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16848_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 39813732 - 39813952
Alignment:
| Q |
1 |
cccatatttgacttcacagctccagggacaacattcacaacatcaattccaaaatgtccaagttctaatctgtatgttgaaaataacaacaattataagc |
100 |
Q |
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| T |
39813732 |
cccatatttgacttcacagctccagggacaacattcacaacatcaattccaaaatgtccaagttctaatctgtatgttgaaaataacaacaattataagc |
39813831 |
T |
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| Q |
101 |
tgtaaaggagaaaggtcagattggaagagtccagccactagattctaaatggcgtattgttcatgtacaaaaccaaagcaacaatttatatcaaaacaag |
200 |
Q |
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| T |
39813832 |
tgtaaaggagaaaggtcagattggaagagtccagacactagattctaaatggcgtattgttcatgtacaaaaccaaagcaacaatttatatcaaaacaag |
39813931 |
T |
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| Q |
201 |
cgtttgaagataggaaaagaa |
221 |
Q |
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| T |
39813932 |
cgtttgaagataggaaaagaa |
39813952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 39816613 - 39816701
Alignment:
| Q |
4 |
atatttgacttcacagctccagggacaacattcacaacatcaattccaaaatgtccaagttctaatctgtatgttgaaaataacaacaa |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
39816613 |
atatttgacttcacagctccagggacaacattcacaacatcaattccaaaatgtccaagttccaatctgtttgttgaaaataacaacaa |
39816701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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