View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16849_low_3 (Length: 255)
Name: NF16849_low_3
Description: NF16849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16849_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 29037560 - 29037773
Alignment:
| Q |
17 |
acgaaggaccagaagctgtgacaccaccacctatttttagttattgtggaaagaatgaagctcttgacattgtctttcctgattggtcctattggggttg |
116 |
Q |
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| T |
29037560 |
acgaaggaccagaagctgtgacaccaccacctatttttagttattgtggaaagaatgaagctcttgacattgtctttcctgattggtcctattggggttg |
29037659 |
T |
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| Q |
117 |
gtaagtctcctatattaaattactacttattaatgtggatttttggaatgttaataagtttaacaaggtggtatacacgattttgttgaagctttaaaat |
216 |
Q |
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| T |
29037660 |
gtaagtctcctatattaaattactacttattaatgtggatttttggaatgttaataagtttaacaaggtgctatacacgattttgttgaagcattaaaat |
29037759 |
T |
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| Q |
217 |
gtaaagtgatggcg |
230 |
Q |
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| T |
29037760 |
gtagcgtgatggcg |
29037773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 29017711 - 29017803
Alignment:
| Q |
32 |
ctgtgacaccaccacctatttttagttattgtggaaagaatgaagctcttgacattgtctttcctgattggtcctattggggttggtaagtct |
124 |
Q |
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| T |
29017711 |
ctgtgacactaccacctatttttagttattgtggacaaaatgatgctcttgatattgtctttcctgattggtccttttggggttggtaagtct |
29017803 |
T |
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