View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16849_low_4 (Length: 236)
Name: NF16849_low_4
Description: NF16849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16849_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 49729003 - 49728909
Alignment:
| Q |
73 |
cgatattaatctaaaaagttattcttatattgtggtttaggctttggggagtcgtaagtatagatgaacgaaatgaatttggtttgatatttttt |
167 |
Q |
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| T |
49729003 |
cgatattaatctaaaaagttattcttatattgtggtttaggctttggggagtcgtaagtatagatgaaccaaatggatttggtttgatttttttt |
49728909 |
T |
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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 49728486 - 49728411
Alignment:
| Q |
161 |
attttttaggttcattgaacaaataattataaaatatactccaagctttgattcatcaatggttctattcctatgc |
236 |
Q |
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| T |
49728486 |
attttttaggttcattgaacaaataattataaaatatactccaagctttgatttatcaatggttctattcctatgc |
49728411 |
T |
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