View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16849_low_7 (Length: 220)
Name: NF16849_low_7
Description: NF16849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16849_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 38116460 - 38116272
Alignment:
| Q |
14 |
catcatcaattccaacaacaacaaccatccaaaaaacgcaccagcagttgctccaaaccaatacctaaaccggccacaccatagctgccacaaccaaaca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116460 |
catcatcaattccaacaacaacaaccatccaaaaaacgcaccagcagttgctccaaaccaatacctaaaccggccacaccatagctgccacaaccaaaca |
38116361 |
T |
|
| Q |
114 |
gaaactgctgctaacatcagcagtctcagccgaaccagcccagccgccaccgacatctttctcaaagacctgctcctacccttttcaactatgatgat |
211 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116360 |
gaaactgctgctaacatcagcagtctc---------agcccagccgccaccgacatctttctcaaagacctgctcctacccttttcaactatgatgat |
38116272 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 45113898 - 45113687
Alignment:
| Q |
14 |
catcatcaattccaacaacaacaaccatccaaaaaacgcaccagcagttgctccaaaccaatacctaaaccggccacaccatagctgccacaaccaaaca |
113 |
Q |
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|||||||||||||||||||||| ||| | |||||| ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
45113898 |
catcatcaattccaacaacaaccacc--caaaaaaatgcaccagcagttgttccaaaccaatacctaaatcggccacaccctagctgccacaaccaaaca |
45113801 |
T |
|
| Q |
114 |
gaaactgctg-------------------ctaacatcagcagtctcagccgaaccagcccagccgccaccgacatctttctcaaagacctgctcctaccc |
194 |
Q |
| |
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||||| |||| |||||| |||||||||||||||||| |||||| |||| |||||||||||||||||| ||||||||||| |
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| T |
45113800 |
gaaacagctgcacacgcagctagcagctactaacagcagcagtctcagccgaactagccca---accactgacatctttctcaaagacttgctcctaccc |
45113704 |
T |
|
| Q |
195 |
ttttcaactatgatgat |
211 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
45113703 |
ttttcaactatgatgat |
45113687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 211
Target Start/End: Complemental strand, 11288349 - 11288320
Alignment:
| Q |
182 |
cctgctcctacccttttcaactatgatgat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
11288349 |
cctgctcctacccttttcaactatgatgat |
11288320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 1015973 - 1015885
Alignment:
| Q |
120 |
gctgctaacatcagcagtctcagccgaaccagcccagccgccaccgacatctttctcaaagacctgctcctacccttttcaactatgatgat |
211 |
Q |
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|||||||||| || ||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
1015973 |
gctgctaacagcaacagtctcagccgaaccagcccagcc---acagacatatttctcaaagacctgctcctacccttttcagttatgatgat |
1015885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 22776309 - 22776232
Alignment:
| Q |
42 |
ccaaaaaacgcaccagcagttgctccaaaccaatacctaaaccggccacacca-tagctgccacaaccaaacagaaac |
118 |
Q |
| |
|
||||||||| ||||||||| || |||||||||| || ||||||||| || || |||||||||||||||||||||||| |
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|
| T |
22776309 |
ccaaaaaacacaccagcagctgttccaaaccaaaacgtaaaccggcaacgcccctagctgccacaaccaaacagaaac |
22776232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 22776202 - 22776157
Alignment:
| Q |
110 |
aacagaaactgctgctaacatcagcagtctcagccgaaccagccca |
155 |
Q |
| |
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||||| ||| |||||||||| || |||||||||||||||||||||| |
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|
| T |
22776202 |
aacagcaacagctgctaacagcaacagtctcagccgaaccagccca |
22776157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 34351873 - 34351933
Alignment:
| Q |
14 |
catcatcaattccaacaacaacaaccatccaaaaaacgcaccagcagttgctccaaaccaa |
74 |
Q |
| |
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||||||||||||||||| ||||||||| ||||||| | ||||| || |||||||| ||||| |
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| T |
34351873 |
catcatcaattccaacagcaacaaccacccaaaaaccacaccaacatttgctccacaccaa |
34351933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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