View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1684R-Insertion-4 (Length: 865)

Name: NF1684R-Insertion-4
Description: NF1684R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1684R-Insertion-4
NF1684R-Insertion-4
[»] chr5 (11 HSPs)
chr5 (149-864)||(32033520-32034233)
chr5 (95-664)||(31791016-31791607)
chr5 (95-536)||(32023065-32023508)
chr5 (166-651)||(32011502-32011992)
chr5 (674-861)||(31791632-31791818)
chr5 (685-828)||(32012044-32012187)
chr5 (682-828)||(32023590-32023736)
chr5 (9-64)||(31790610-31790665)
chr5 (64-96)||(31790582-31790614)
chr5 (831-863)||(32012212-32012244)
chr5 (831-863)||(32023759-32023791)
[»] chr3 (8 HSPs)
chr3 (194-632)||(48114006-48114447)
chr3 (691-803)||(48113797-48113909)
chr3 (712-803)||(48133917-48134008)
chr3 (723-827)||(48140723-48140827)
chr3 (259-353)||(48124424-48124515)
chr3 (95-160)||(48140162-48140227)
chr3 (480-609)||(48134160-48134289)
chr3 (204-279)||(48140303-48140378)
[»] chr8 (5 HSPs)
chr8 (712-803)||(25244364-25244455)
chr8 (723-827)||(25253362-25253466)
chr8 (95-160)||(25252801-25252866)
chr8 (480-609)||(25244556-25244685)
chr8 (204-279)||(25252942-25253017)


Alignment Details
Target: chr5 (Bit Score: 610; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 149 - 864
Target Start/End: Original strand, 32033520 - 32034233
Alignment:
Q  149 gcatttcatggacgtgggaaatcaataatcttaaatagatccatgttggagtctgcagaaatcaaaacttggcgttgtaattgtgcacttgtcgaaattt 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32033520 gcatttcatggacgtgggaaatcaataatcttaaatagatccatgttggagtctgcagaaatcaaaacttggcattgtaattgtgcacttgtcgaaattt 32033619  T
Q  249 gttattctacttctttttcaatcagctctttgaatattcctttcttttgcttattttaccgaccacaaaagttataacctgaggtatatgaattttcaac 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32033620 gttattctacttctttttcaatcagctctttgaatattcctttcttttgcttattttaccgaccacaaaagttataacctgaggtatatgaattttcaac 32033719  T
Q  349 tatttccaattcaacnnnnnnngtagaaagtggcataggtggagttgctgctcttacaaacgtcggagaacctacaagtgggattcttggaactgcaagt 448  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32033720 tatttccaattcaacaaaaaaagtagaaagtggcataggtggagttgctgctcttacaaacgtcggagaacctacaagtgggattcttggaactgcaagt 32033819  T
Q  449 gctcctactgatatggttgctgcattagaaggtggaaatttcaaagagcagcaatggcatacaatttggtttattgcagcggccttcctcttgatttctt 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32033820 gctcctactgatatggttgctgcattagaaggtggaaatttcaaagagcagcaatggcatacaatttggtttattgcagcggccttcctcttgatttctt 32033919  T
Q  549 gtgcagtagctcacatcgtgtataaaggaatcagaaaaggtattactgtgtcattgtaactcaaaccactgagcttaattcaatagtcaatcggattttg 648  Q
    ||| ||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32033920 gtgtag----gcacatcgtgtataaaggaatcagaaaaggtattactgtgtcattgtaactcaaaccactgagcttaattcaatagtcaatcggattttg 32034015  T
Q  649 attcgctcattctctg--nnnnnnnnnatatcacatttatgtacgaagaagtgcagccaagtgtagagataaatactaaacttagcgatgtgaaaggtgt 746  Q
    ||||||||||||||||           ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  32034016 attcgctcattctctgtttttttttttatatcacatttatgtacgaagaaatgcagccaagtgttgagacaaatactaaacttagcgatgtgaaaggtgt 32034115  T
Q  747 agacaaggcaaaggctgaacttgaagaaattgttgattacctaaaagatcctaaggttgaattttccagcattaatctatgcctctctagcatgaaatag 846  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32034116 agacgaggcaaaagctgaacttgaagaaattgttgattacctaaaagatcctaaggttgaattttccagcattaatctatgcctctctagcatgaaatag 32034215  T
Q  847 ttatttgatttacatgtt 864  Q
    ||||||||||||||||||    
T  32034216 ttatttgatttacatgtt 32034233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 95 - 664
Target Start/End: Original strand, 31791016 - 31791607
Alignment:
Q  95 acctcttttgacattttatttagtgtaaggaaaaagtataatttcataaaacttgcatttcatggacgtgggaaatcaataatcttaaatagatccatgt 194  Q
    |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  31791016 acctcttttgaccttttatttagtgataggaacaagtataatttcataaaacttgcatttcatggaagtgtgaaatcaataatcttaaatagatccatgt 31791115  T
Q  195 tggagtctgcagaaatcaaaacttggcgttgtaattgtgcacttgtcgaaatttgttattctactt-------------ctttttcaatcagctctttga 281  Q
    ||||||||||||||||||||||||||| ||| || ||||||||| |||||||||| ||||||||||             |||||||||||||||||||||    
T  31791116 tggagtctgcagaaatcaaaacttggcattgcaactgtgcacttatcgaaatttgctattctactttgctattctacttctttttcaatcagctctttga 31791215  T
Q  282 atattcctttcttttgcttattttaccgaccacaaaagttataacctgaggtatatgaattttcaactatttccaattcaacnnnnnnng--tagaaagt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||| ||||||||       |  ||||||||    
T  31791216 atattcctttcttttgcttattttaccgaccacaaaagttataacct-------atcaattttcaactatttctaattcaacaaaaaaagagtagaaagt 31791308  T
Q  380 ggcataggtggagttgctgctcttacaaacgtcggagaacct-----acaag---tgggattcttggaactgcaagtgctcctactgatatggttgctgc 471  Q
    || ||||||||||||||||||||||||||||||||| || ||     | |||   |||||||||||||||||||||||||| |||||||||||| |||||    
T  31791309 ggtataggtggagttgctgctcttacaaacgtcggaaaagctgtattagaagggatgggattcttggaactgcaagtgctcttactgatatggtcgctgc 31791408  T
Q  472 attagaaggtggaaatttcaaagag----cagca--atggcatacaatttggtttattgcagcggccttcctcttgatttcttgtgcagtagctcacatc 565  Q
    |||||||||||||||||||||||||    |||||  |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||    
T  31791409 attagaaggtggaaatttcaaagagagcacagcaatatggcatacaatttcgtttattgcagcggccttcctcttgatttgttgtgtagtagctcatatc 31791508  T
Q  566 gtgtataaaggaatcagaaaaggtattactgtgtcattgtaactcaaaccactgagcttaattcaatagtcaatcggattttgattcgctcattctctg 664  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  31791509 gtgtataaaggaattagaaaaggtgttactgtgtcattgtaactcaaacaactgagcttaattcaatagtcaatctgaatttgattcgctcattctctg 31791607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 95 - 536
Target Start/End: Original strand, 32023065 - 32023508
Alignment:
Q  95 acctcttttgacattttatttagtgtaaggaaaaagtataatttcataaaacttgcatttcatggacgtgggaaatcaataatcttaaatagatccatgt 194  Q
    |||||||||||| ||||||||||||  ||||| |||||||||||||||||||||| |||||||||| ||| ||||||| |||||||||||||||||||||    
T  32023065 acctcttttgaccttttatttagtgataggaacaagtataatttcataaaacttgaatttcatggatgtgtgaaatcattaatcttaaatagatccatgt 32023164  T
Q  195 tggagtctgcagaaatcaaaacttggcgttgtaattgtgcacttgtcgaaatttgttattctacttctttttcaatcagctctttgaatattcctttctt 294  Q
    |||||||||||||| |||||||| ||| ||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  32023165 tggagtctgcagaattcaaaactcggcattgcaattatgcacttgtcgaagtttgttattctgcttctttttcaatcagctcttggaatattcctttctt 32023264  T
Q  295 ttgcttattttaccgaccacaaaagttataacctgaggtatatgaattttcaactatttccaattcaacnnnnnnngtagaaagtggcataggtggagtt 394  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||||| |       | ||||||| | ||||| ||  ||    
T  32023265 ttgcttattttaccgaccataaaagttataacccgaggtatatgaattttcagctatttctaattcagcgaaaaaagaagaaagtagtataggcggcatt 32023364  T
Q  395 gctgctcttacaaacgtcggagaacctacaag---tgggattcttggaactgcaagtgctcctactgatatggttgctgcattagaaggtggaaatttca 491  Q
    || ||||||||||| |||||||||||||||||   ||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  32023365 gcggctcttacaaatgtcggagaacctacaagagatgggattcttgaaactacaagtgctcctactgatatggtcgctgcattagaaggtggaaatttca 32023464  T
Q  492 aagagcagcaatggcatacaatttggtttattgcagcggccttcc 536  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||    
T  32023465 aagagcag-tatggcatacaatttggtttattgcagtggccttcc 32023508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 166 - 651
Target Start/End: Original strand, 32011502 - 32011992
Alignment:
Q  166 gaaatcaataatcttaaatagatccatgttggagtctgcagaaatcaaaacttggcgttgtaattgtgcacttgtcgaaatttgttattctacttctttt 265  Q
    |||||| ||||||||| ||||||| | |||||| ||||||||| |||||||||||| ||| || || ||||||||| |||||||||||||| ||||||||    
T  32011502 gaaatccataatcttatatagatctaagttggattctgcagaattcaaaacttggcattgcaactgcgcacttgtcaaaatttgttattcttcttctttt 32011601  T
Q  266 tcaatcagctctttgaatattcctttcttttgcttattttaccgaccacaaaagttataacctgaggtatatgaattttcaactatttccaattcaacnn 365  Q
     ||||||||| |||||| |||| ||||||||||  |||||||||| | |||  |||||||||||||| ||||||||||||| |||||||  ||||| |      
T  32011602 -caatcagctttttgaacattcatttcttttgcacattttaccgatctcaa--gttataacctgaggcatatgaattttcagctatttctcattcagcga 32011698  T
Q  366 nnnnngtagaaagtggcataggtggagttgctgctcttacaaacgtcggagaacctacaag---tgggattcttggaactgcaagtgctcctactgatat 462  Q
         | ||| ||| | |||||||| ||||| ||||||| ||| ||||||||||| ||||    |||||||||||||||| |||||||||||  |||||     
T  32011699 gaaaggaagagagtagtataggtggtgttgcagctcttataaatgtcggagaaccaacaaaagatgggattcttggaactacaagtgctcctgttgataa 32011798  T
Q  463 ggttgctgcattagaaggtggaaatttcaaagagcagcaatggcatacaatttggtttattgcagcggccttcctcttgatttcttgtgcagtagctcac 562  Q
    |||||||||||||||||||| ||||||||| ||||| | ||||||||||||||||||| |||||| ||||||||||||||| | | ||| || |||||||    
T  32011799 ggttgctgcattagaaggtgaaaatttcaatgagcaactatggcatacaatttggtttgttgcaggggccttcctcttgatatgtggtgtaggagctcac 32011898  T
Q  563 atcgtgtataaaggaatcagaaaagg---tattactgtgtcattgtaact--caaaccactgagcttaattcaatagtcaatcggattttgatt 651  Q
    ||||||||||||||||| |  | |||   ||||||||| |||||||||||  |||| | ||||| ||||||||||| |||||| || |||||||    
T  32011899 atcgtgtataaaggaattaacacaggtattattactgtctcattgtaacttacaaatcgctgagtttaattcaatattcaatctgagtttgatt 32011992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 674 - 861
Target Start/End: Original strand, 31791632 - 31791818
Alignment:
Q  674 atatcacatttatgtacgaagaagtgcagccaagtgtagagataaatactaaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaaga 773  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| | |||||||||||||||||||    
T  31791632 atatcacatttatgtacgaagaagtgcagccaagtgtagagactaatactaaacttagcgacgtgaaaggtgtagacatgccaaaggctgaacttgaaga 31791731  T
Q  774 aattgttgattacctaaaagatcctaaggttgaattttccagcattaatctatgcctctctagcatgaaatagttatttgatttacat 861  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||||||  |||  ||||||||||| ||||||||||||||||||||    
T  31791732 aattgttgattacctaaaagatcccgaggtagaattttccagcattaattcatg-ttctctagcatggaatagttatttgatttacat 31791818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 685 - 828
Target Start/End: Original strand, 32012044 - 32012187
Alignment:
Q  685 atgtacgaagaagtgcagccaagtgtagagataaatactaaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgatt 784  Q
    |||||||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  32012044 atgtacgaagaactgcagcccagtgtagagacaaatactaaatttagcgatgtgaaaggtgtagatgaggcgaaggctgaacttgaagaaattgttgatt 32012143  T
Q  785 acctaaaagatcctaaggttgaattttccagcattaatctatgc 828  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  32012144 acctaaaagatcctaaggtagacttttccagcattaatccatgc 32012187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 682 - 828
Target Start/End: Original strand, 32023590 - 32023736
Alignment:
Q  682 tttatgtacgaagaagtgcagccaagtgtagagataaatactaaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttg 781  Q
    ||||||||| ||||||||||||| ||| |||||| || |||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||    
T  32023590 tttatgtacaaagaagtgcagcccagtctagagacaagtactaaacttagcgatatgaaaggtgtaggcgaggcaaaggctgaacttgaagaaattgttg 32023689  T
Q  782 attacctaaaagatcctaaggttgaattttccagcattaatctatgc 828  Q
    |||||||||||||||||||||| || |||||||||||||||| ||||    
T  32023690 attacctaaaagatcctaaggtagacttttccagcattaatccatgc 32023736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 31790610 - 31790665
Alignment:
Q  9 gtaaccgtttgtaacagaatcacattttatgaaatcagaactttagaaatcaattg 64  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31790610 gtaactgtttgtaacagaatcacattttatgaaatcagaacgttagaaatcaattg 31790665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 31790582 - 31790614
Alignment:
Q  64 gcaactagcttttatataagcaggtgatgtaac 96  Q
    |||||||||||||||||||||||||||||||||    
T  31790582 gcaactagcttttatataagcaggtgatgtaac 31790614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 831 - 863
Target Start/End: Original strand, 32012212 - 32012244
Alignment:
Q  831 ctctagcatgaaatagttatttgatttacatgt 863  Q
    |||||||||||||||||||||||||||||||||    
T  32012212 ctctagcatgaaatagttatttgatttacatgt 32012244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 831 - 863
Target Start/End: Original strand, 32023759 - 32023791
Alignment:
Q  831 ctctagcatgaaatagttatttgatttacatgt 863  Q
    |||||||||||||||||||||||||||||||||    
T  32023759 ctctagcatgaaatagttatttgatttacatgt 32023791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 194 - 632
Target Start/End: Complemental strand, 48114447 - 48114006
Alignment:
Q  194 ttggagtctgcagaaatcaaaacttggcgttgtaattgtgcacttgtcgaaatttgttattctacttctttttcaatcagctctttgaat-----attcc 288  Q
    ||||| ||||||||| |||||| ||||  ||| |||||  ||||||||||||||||||||| | |||||||| ||| |||||||||| ||     |||||    
T  48114447 ttggactctgcagaattcaaaatttggaattgcaattgcacacttgtcgaaatttgttatttt-cttctttt-caaacagctctttgcattcaacattcc 48114350  T
Q  289 tttcttttgcttattttaccgaccacaaaagttataacctgaggtatatgaattttcaactatttccaattcaacnnnnnnngtagaaagtggcataggt 388  Q
    ||| ||||||  ||||||| ||||||     || |||||  | |||| ||||||||||  |||||| ||||||         | ||||||||| || |||    
T  48114349 tttattttgcacattttacagaccac-----ttgtaacccaatgtatctgaattttcaggtatttctaattcagtgagagaagaagaaagtggtatcggt 48114255  T
Q  389 ggagttgctgctcttacaaacgtcggagaacctacaag---tgggattcttggaactgcaagtgctcctactgatatggttgctgcattagaaggtggaa 485  Q
    ||  |||||| ||||| ||| || ||| || ||||||    ||| ||||||||||||||  ||||||||| | ||||||||||||||| |||||||||||    
T  48114254 ggccttgctgttcttagaaatgtgggaaaatctacaaaagatggaattcttggaactgctggtgctcctattcatatggttgctgcatcagaaggtggaa 48114155  T
Q  486 atttcaaagagcagcaatggcatacaatttggtttattgcagcggccttcctcttgatttcttgtgcagtagctcacatcgtgtataaaggaatcagaaa 585  Q
     ||||||||||||   ||||| ||||||| ||| | |||||| |||||||||| |||||||  ||| || ||||| ||| | | |||||||||| || ||    
T  48114154 gtttcaaagagcaaatatggcgtacaattaggtctgttgcagtggccttcctcgtgatttcgggtgtaggagctctcattgaggataaaggaattagtaa 48114055  T
Q  586 aggtattactgtgtcattgtaact--caaaccactgagcttaattcaat 632  Q
    |||||||| ||||| |||||||||  ||||| ||| |||||||||||||    
T  48114054 aggtattattgtgttattgtaacttgcaaacgacttagcttaattcaat 48114006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 691 - 803
Target Start/End: Complemental strand, 48113909 - 48113797
Alignment:
Q  691 gaagaagtgcagccaagtgtagagataaatactaaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgattacctaa 790  Q
    |||||||||||||| ||||||||||  | ||||||| |||| |||||||||||||||||  |||||||||| |||||||||||||||||| |||||||||    
T  48113909 gaagaagtgcagcccagtgtagagaccagtactaaatttagtgatgtgaaaggtgtagatgaggcaaaggcggaacttgaagaaattgttcattacctaa 48113810  T
Q  791 aagatcctaaggt 803  Q
     ||||||||||||    
T  48113809 gagatcctaaggt 48113797  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 712 - 803
Target Start/End: Complemental strand, 48134008 - 48133917
Alignment:
Q  712 gagataaatactaaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgattacctaaaagatcctaaggt 803  Q
    |||| |||||||||||||||||||||||||||||| ||  ||||||| ||||| ||||||||||||||| ||||||||| ||||||||||||    
T  48134008 gagacaaatactaaacttagcgatgtgaaaggtgtggatgaggcaaaagctgatcttgaagaaattgttcattacctaagagatcctaaggt 48133917  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 723 - 827
Target Start/End: Original strand, 48140723 - 48140827
Alignment:
Q  723 taaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgattacctaaaagatcctaaggttgaattttccagcattaat 822  Q
    |||| ||||||||||||||||||| ||  |||||||||| |||||||||||||||||| ||| ||||||||||||  ||||||| |||||  |||| |||    
T  48140723 taaatttagcgatgtgaaaggtgtggatgaggcaaaggccgaacttgaagaaattgttcatttcctaaaagatcccgaggttgacttttctggcataaat 48140822  T
Q  823 ctatg 827  Q
    |||||    
T  48140823 ctatg 48140827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 48124515 - 48124424
Alignment:
Q  259 ttctttttcaatcagctctttgaatattcctttcttttgcttattttaccgaccacaaaagttataacctgaggtatatgaattttcaactattt 353  Q
    ||||| |||||||||||||| |||||||||||| ||| |   ||||||| ||||||||  |||||||||||||||||||||||||||| ||||||    
T  48124515 ttcttcttcaatcagctcttcgaatattcctttatttggac-attttacagaccacaa--gttataacctgaggtatatgaattttcagctattt 48124424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 48140162 - 48140227
Alignment:
Q  95 acctcttttgacattttatttagtgtaaggaaaaagtataatttcataaaacttgcatttcatgga 160  Q
    |||||||||||| |||| ||||| |  ||||| |||||||||||||||||||||||||||||||||    
T  48140162 acctcttttgaccttttgtttagggataggaacaagtataatttcataaaacttgcatttcatgga 48140227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 609
Target Start/End: Complemental strand, 48134289 - 48134160
Alignment:
Q  480 gtggaaatttcaaagagcagcaatggcatacaatttggtttattgcagcggccttcctcttgatttcttgtgcagtagctcacatcgtgtataaaggaat 579  Q
    ||||||||||||||||||||| |||||  |||||| ||  | |||||| ||  ||| ||||||||||| |||  | |||||  || | | ||||||||||    
T  48134289 gtggaaatttcaaagagcagctatggcgaacaattaggactcttgcagtgggattcatcttgatttctggtgtcggagctcttattgaggataaaggaat 48134190  T
Q  580 cagaaaaggtattactgtgtcattgtaact 609  Q
     || ||||||||| ||||||||| ||||||    
T  48134189 tagtaaaggtattgctgtgtcatcgtaact 48134160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 48140303 - 48140378
Alignment:
Q  204 cagaaatcaaaacttggcgttgtaattgtgcacttgtcgaaatttgttattctacttctttttcaatcagctcttt 279  Q
    ||||| |||||||||||  | | ||| ||| ||||| |||||||| ||||| | ||||||||||||||||||||||    
T  48140303 cagaattcaaaacttggaatagcaatagtgaacttgccgaaattttttattattcttctttttcaatcagctcttt 48140378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 712 - 803
Target Start/End: Complemental strand, 25244455 - 25244364
Alignment:
Q  712 gagataaatactaaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgattacctaaaagatcctaaggt 803  Q
    |||| |||||||||||||||||||||||||||||| ||  ||||||| ||||| ||||||||||||||| ||||||||| ||||||||||||    
T  25244455 gagacaaatactaaacttagcgatgtgaaaggtgtggatgaggcaaaagctgatcttgaagaaattgttcattacctaagagatcctaaggt 25244364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 723 - 827
Target Start/End: Original strand, 25253362 - 25253466
Alignment:
Q  723 taaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgattacctaaaagatcctaaggttgaattttccagcattaat 822  Q
    |||| ||||||||||||||||||| ||  |||||||||| |||||||||||||||||| ||| ||||||||||||  ||||||| |||||  |||| |||    
T  25253362 taaatttagcgatgtgaaaggtgtggatgaggcaaaggccgaacttgaagaaattgttcatttcctaaaagatcccgaggttgacttttctggcataaat 25253461  T
Q  823 ctatg 827  Q
    |||||    
T  25253462 ctatg 25253466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 25252801 - 25252866
Alignment:
Q  95 acctcttttgacattttatttagtgtaaggaaaaagtataatttcataaaacttgcatttcatgga 160  Q
    |||||||||||| |||| ||||| |  ||||| |||||||||||||||||||||||||||||||||    
T  25252801 acctcttttgaccttttgtttagggataggaacaagtataatttcataaaacttgcatttcatgga 25252866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 609
Target Start/End: Complemental strand, 25244685 - 25244556
Alignment:
Q  480 gtggaaatttcaaagagcagcaatggcatacaatttggtttattgcagcggccttcctcttgatttcttgtgcagtagctcacatcgtgtataaaggaat 579  Q
    ||||||||||||||||||||| |||||| |||||| ||  | |||||| ||  ||| ||||||||||| |||  | |||||  || | | ||||||||||    
T  25244685 gtggaaatttcaaagagcagctatggcaaacaattaggactcttgcagtgggattcatcttgatttctggtgtcggagctcttattgaggataaaggaat 25244586  T
Q  580 cagaaaaggtattactgtgtcattgtaact 609  Q
     || |||||||||  |||||||| ||||||    
T  25244585 tagtaaaggtattgttgtgtcatcgtaact 25244556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 25252942 - 25253017
Alignment:
Q  204 cagaaatcaaaacttggcgttgtaattgtgcacttgtcgaaatttgttattctacttctttttcaatcagctcttt 279  Q
    ||||| |||||||||||  | | ||| ||| ||||| |||||||| ||||| | ||||||||||||||||||||||    
T  25252942 cagaattcaaaacttggaatagcaatagtgaacttgccgaaattttttattattcttctttttcaatcagctcttt 25253017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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