View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1684_high_4 (Length: 279)
Name: NF1684_high_4
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 30727239 - 30727486
Alignment:
| Q |
16 |
tatagaagatttgattgattcaccatggtaaaggagataaataacggttatgactgagtgtgataaaatactatatagtaaactgtttaacttaagtttc |
115 |
Q |
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| T |
30727239 |
tatagaagatttgattgattcaccatggtaaaggagataaataacggttatgactgagtgtgataaaatactatatagtaaactgtttatcttaagtttc |
30727338 |
T |
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| Q |
116 |
caccaagctcatatggtatataatactgttagtctgttactactg--tggtagtgtaacttaacttcaactatttagtatgtacctaaagtgtgtgccat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30727339 |
caccaagctcatatggtatataatactgttagtctgttactactgtctggtagtgtaacttaacttcaactatttagtatgtacctaaagtgtgtgccat |
30727438 |
T |
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| Q |
214 |
aatttaactcatttctattgtaccaaaaacaagtgtatagcatctctg |
261 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||| |||| |
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| T |
30727439 |
aatttaacacatttccattgtaccaaaaacaagtgtatagcatttctg |
30727486 |
T |
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