View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1684_high_9 (Length: 238)
Name: NF1684_high_9
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33412125 - 33412347
Alignment:
| Q |
1 |
agttgagcctgttttgacacttgccttgtctaggaacctaaataataaattaatatatgaaattgtatcacaaaagtaacagagtcgtgttatttgaaca |
100 |
Q |
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| T |
33412125 |
agttgagcctgttttgacacttgccttgtctaggaacctaaataataaattaatatatgaaattgcatcacaaaagtaacagagtcgtgttatttgaaca |
33412224 |
T |
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| Q |
101 |
actaagatttgacaactttcactatagttttttaaggggttcacgtggttgtagatttgaacgtctgaaaaatgtgtccaagtttgtggttaatgaagtt |
200 |
Q |
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| T |
33412225 |
actaagatttgacaactttcactatagttttttaaggggttcacgtggttgtagatttgaacgtctgaaaaatgtgtccaagtttgtggttaatgaagtt |
33412324 |
T |
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| Q |
201 |
acgttgatagttaatgagttttg |
223 |
Q |
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|| |||||||||||||||||||| |
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| T |
33412325 |
acattgatagttaatgagttttg |
33412347 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 36292683 - 36292643
Alignment:
| Q |
183 |
tttgtggttaatgaagttacgttgatagttaatgagttttg |
223 |
Q |
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| T |
36292683 |
tttgtggttaatgaagttacgtcgatggttaatgagttttg |
36292643 |
T |
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