View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1684_low_11 (Length: 268)
Name: NF1684_low_11
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 54415888 - 54416141
Alignment:
| Q |
15 |
ctaccctgcatatttaatggaggagtctcctagtggtgggggataggggaagggaaactgttctcctagcacatccagtgctcctgtcaatactgtattg |
114 |
Q |
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| T |
54415888 |
ctaccctgcatatttaatggaggagtctcctagtggtgggggataggggaagggaaactgttctccttgcacatccagtgctcctgtcaatactgtattg |
54415987 |
T |
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| Q |
115 |
acaatacagctgctaactccagtcagttagttatgaattgttattggctgtgggcttataagctatataaggtaaacacaggctccctactccccttcca |
214 |
Q |
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| T |
54415988 |
acaatacagctgccaactccagtcagttagttatgaattgttattggctgtgggcttataagctatataaggtaaacacaggctccctactccccttcca |
54416087 |
T |
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| Q |
215 |
cacatccagcggtaattttcgagtgattaacatcaaattttacttgttactttg |
268 |
Q |
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| T |
54416088 |
cacatccagcggtaatttacgagtgattaacatcaaattttacttgttactttg |
54416141 |
T |
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