View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1684_low_12 (Length: 251)
Name: NF1684_low_12
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 279845 - 279584
Alignment:
| Q |
1 |
acattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
279845 |
acattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgacctactg |
279746 |
T |
|
| Q |
101 |
taacacttaataaacttataatattggtaccttgatttaaagagatgttcccttcatgtataaa------------------accatgttgtgtacccgt |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
279745 |
taacacttaataaacttataatattggtaccttgatttaaagagatgttcccttcatgtataaaaccaggttgactaacggtaccatgttgtgtacccgt |
279646 |
T |
|
| Q |
183 |
aaaaaatccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctt |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
279645 |
caaaaatccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctt |
279584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 290290 - 290148
Alignment:
| Q |
1 |
acattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactg |
100 |
Q |
| |
|
||||||||||||| ||| |||||| |||||| ||||||| |||||||| |||||||||| |||||||| | || ||| |||||| | |||| || |
|
|
| T |
290290 |
acattgtttggatattcagttgaaatgagtttcgcaggaccgccaacaataccagtttctttcatatcaatgtacccactacaatttgatttgccaagtg |
290191 |
T |
|
| Q |
101 |
taacacttaataaacttataatattggtaccttgatttaaaga |
143 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| || ||||| |
|
|
| T |
290190 |
taacacttaacaaacttataatattggcaccttgtttcaaaga |
290148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 24532017 - 24531886
Alignment:
| Q |
1 |
acattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactg |
100 |
Q |
| |
|
||||||| ||||| ||| ||||||| |||||| ||| ||||||||||||| |||||||||| |||||||| |||| ||| |||||| | ||||| || |
|
|
| T |
24532017 |
acattgtctggatattcaattgaaatgagtttaacatgacccccaacaataccagtttctttcatatcaatgaacccactacaatttgatttaccaagtg |
24531918 |
T |
|
| Q |
101 |
taacacttaataaacttataatattggtacct |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24531917 |
taacacttaataaacttataatattggtacct |
24531886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 24525345 - 24525213
Alignment:
| Q |
1 |
acattgtttggattttcgattgaaaagagttttacaggaccccc-aacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaact |
99 |
Q |
| |
|
||||||| ||||| ||| ||||||| |||||| ||| ||||||| |||||| |||||||||| |||||||| |||| ||| |||||| | ||||| | |
|
|
| T |
24525345 |
acattgtctggatattcaattgaaatgagtttcacatgaccccccaacaataccagtttctttcatatcaatgaacccactacaatttgatttaccaagt |
24525246 |
T |
|
| Q |
100 |
gtaacacttaataaacttataatattggtacct |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24525245 |
gtaacacttaataaacttataatattggtacct |
24525213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University