View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1684_low_13 (Length: 251)
Name: NF1684_low_13
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 13446904 - 13446681
Alignment:
| Q |
17 |
aattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13446904 |
aattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgat |
13446805 |
T |
|
| Q |
117 |
tcatttgattaatttctgaatttttattatttcagaaattgataatgt----taatcaagaaactaatattgtacaacgttttataggctgcaacgagta |
212 |
Q |
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| T |
13446804 |
tcatttgattaatttctgaattttcattatttcagaaattgataatgttaattaatcaagaaactaataatgtacaacattttataggctgcaacgagta |
13446705 |
T |
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| Q |
213 |
ctttgaatggcattattgacacag |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
13446704 |
ctttgaatggcattattgacacag |
13446681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 13426244 - 13426027
Alignment:
| Q |
17 |
aattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgat |
116 |
Q |
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||||||||| ||||||| || ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13426244 |
aattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtatatgat |
13426145 |
T |
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| Q |
117 |
tcatttgattaatttctgaatttttattatttcagaaattgataatgttaatcaagaaactaatattgtacaacgtttt-ataggctgcaacgagtactt |
215 |
Q |
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| T |
13426144 |
tcatttgattgatttgcgaa-tttcattatttcagaaatcgagaatgttaatcaagaaactaatattgtacaacgttttaataggctgcaatgggtactt |
13426046 |
T |
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| Q |
216 |
tgaatggcattattgacac |
234 |
Q |
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| T |
13426045 |
tgaatggtattatcgacac |
13426027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 13419353 - 13419135
Alignment:
| Q |
17 |
aattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgat |
116 |
Q |
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||||||||| |||||| | || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
13419353 |
aattagtacatcgcctcacaaagaaaaggaagcaatagaacacttgggagctgactcgtttctagtaagccgcgatcctgatcagatgcaggtatatgat |
13419254 |
T |
|
| Q |
117 |
tcatttgattaatttctgaatttttattatttcagaaattgataatgttaatcaagaaactaatattgtacaacgttttataggctgcaacgagtacttt |
216 |
Q |
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|||||||||| |||| |||| || | ||||| |||||||| |||| ||||||| |||||||||||||||||| ||| |||| |||||| | ||||||| |
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| T |
13419253 |
tcatttgattcatttgtgaa-ttaaaatattttagaaattggcaatggtaatcaataaactaatattgtacaacatttcatagactgcaatgggtacttt |
13419155 |
T |
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| Q |
217 |
gaatggcattattgacacag |
236 |
Q |
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|||||| ||||||||||||| |
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| T |
13419154 |
gaatggtattattgacacag |
13419135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 13453857 - 13453764
Alignment:
| Q |
17 |
aattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggta |
110 |
Q |
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||||||||| || ||||||||||||||||||||| ||||||||||| |||| ||||| |||||| ||||||| |||||| | |||||| ||||| |
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| T |
13453857 |
aattagtacatcacctaaaaaggaaaaggaagcattagaacacttacgagcggactcatttctaataagccgtgatccaaagcagatgaaggta |
13453764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 13413008 - 13412958
Alignment:
| Q |
17 |
aattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
67 |
Q |
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||||||||| |||||||| || ||||||||||||||||||||||||||||| |
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| T |
13413008 |
aattagtacatcgcctaacaaagaaaaggaagcaatagaacacttaggagc |
13412958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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