View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1684_low_14 (Length: 247)
Name: NF1684_low_14
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33412146 - 33411905
Alignment:
| Q |
1 |
aagtgtcaaaacaggctcaactagtccatggatgttatgcacagttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgct |
100 |
Q |
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| T |
33412146 |
aagtgtcaaaacaggctcaactagtccatggatgttatgcacagttacacatgtagaagagacaaaacaaatgctaaggatgattccaatcttggttgct |
33412047 |
T |
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| Q |
101 |
acatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccag |
200 |
Q |
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| T |
33412046 |
acatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccag |
33411947 |
T |
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| Q |
201 |
caagtttagctgcatttgtcacattgtctttgcttgtctgtg |
242 |
Q |
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| T |
33411946 |
caagtttagctgcatttgtcacattgtccttgcttgtctgtg |
33411905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 15729630 - 15729807
Alignment:
| Q |
42 |
cagttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacaccct |
141 |
Q |
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| T |
15729630 |
cagttacacatgtagaggagaccaaacaaatgataagaatgatcccaatcatggctactacattaattcctagtacaatgattgctcaaataaatacatt |
15729729 |
T |
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| Q |
142 |
ttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgt |
219 |
Q |
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| T |
15729730 |
gtttgtgaaacaaggaacaacacttgatagaggcattgggagtttcaaaattccaccagcaagtttaggtacatttgt |
15729807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 217
Target Start/End: Original strand, 15766204 - 15766392
Alignment:
| Q |
29 |
tggatgttatgcacagttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctc |
128 |
Q |
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||||||||||||||||| ||||| || ||||| || |||||||| || || | | || || | |||||| |||||| |||||||| ||||||| |||| |
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| T |
15766204 |
tggatgttatgcacagtaacacaagtggaagaaaccaaacaaatccttagcttagtccctatttgggttgcaacatttattccaagtgcaatgatagctc |
15766303 |
T |
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| Q |
129 |
aagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcattt |
217 |
Q |
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| T |
15766304 |
aaataaataccctttttgtaaaacaaggaactactcttaacagatccattggcaacttccatattccaccatcaagtttagctgcattt |
15766392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 15737235 - 15737410
Alignment:
| Q |
44 |
gttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacacccttt |
143 |
Q |
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|||||||| ||||| ||||| |||||||||||||| ||||| ||||| || | | | ||||| |||| ||||||||| | |||||| |||| || || | |
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| T |
15737235 |
gttacacacgtagaggagaccaaacaaatgctaagaatgatcccaattttagctacaacattaattcctagtacaatggttgctcaaataaatacactct |
15737334 |
T |
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| Q |
144 |
ttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgt |
219 |
Q |
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| T |
15737335 |
ttgtgaagcaaggaacaacacttgatagagacattgggagtttccaaattccaccagcaagtttaggtacatttgt |
15737410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 15755334 - 15755521
Alignment:
| Q |
28 |
atggatgttatgcacagttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggct |
127 |
Q |
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| T |
15755334 |
atggatgttatgcacaataacacaagtagaggaaaccaaacaaatccttagcttaatacctatttgggttgccacatttattccaagtgcaatgattgct |
15755433 |
T |
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| Q |
128 |
caagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcat |
215 |
Q |
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| T |
15755434 |
caaataaatacccttttcataaaacaaggaactactcttaacagatccattggcaacttaaaagttcctccagcaagtttaactgcat |
15755521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 208
Target Start/End: Original strand, 15779337 - 15779498
Alignment:
| Q |
47 |
acacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttg |
146 |
Q |
| |
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||||| ||||| ||||| |||||||| ||||| | || || || | ||||||||||||| |||| ||| ||||||| ||||| |||| ||| | |||| |
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| T |
15779337 |
acacaagtagaggagaccaaacaaatcctaagtgtaatccctatttgggttgctacatttattcctagtgcaatgattgctcagataaataccttgtttg |
15779436 |
T |
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| Q |
147 |
taaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagttta |
208 |
Q |
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|||| |||||| | ||||| |||||| |||||| | |||| | ||||| ||| |||||||| |
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| T |
15779437 |
taaagcaaggatctacactcgacagagccattggcaacttcgatattcctccatcaagttta |
15779498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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