View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1684_low_16 (Length: 243)

Name: NF1684_low_16
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1684_low_16
NF1684_low_16
[»] chr3 (2 HSPs)
chr3 (1-161)||(8522842-8523002)
chr3 (190-243)||(8523034-8523087)
[»] chr2 (3 HSPs)
chr2 (1-169)||(11994583-11994751)
chr2 (1-169)||(12248178-12248346)
chr2 (1-113)||(32682155-32682273)
[»] chr5 (9 HSPs)
chr5 (1-161)||(42117471-42117631)
chr5 (1-161)||(42128613-42128773)
chr5 (1-98)||(41444084-41444181)
chr5 (1-110)||(42123219-42123328)
chr5 (4-113)||(41713797-41713906)
chr5 (1-71)||(41572300-41572370)
chr5 (1-71)||(41617939-41618009)
chr5 (4-161)||(34240757-34240914)
chr5 (4-115)||(34233030-34233141)
[»] chr6 (2 HSPs)
chr6 (1-155)||(25523231-25523385)
chr6 (1-117)||(24140569-24140685)
[»] chr4 (1 HSPs)
chr4 (2-117)||(11117883-11117998)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 8522842 - 8523002
Alignment:
Q  1 tgggaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagatgt 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  8522842 tgggaaaggttaagccctatgattgcatgaagctcaccaataatctttggaatctcgccttcaaatttgtttcttgacaaatcaataattacaaagttgt 8522941  T
Q  101 ttggaattttcaccagtttcannnnnnncccttttgtcgctacaatcacagaatcatagta 161  Q
    ||||||||||||| |||||||       |||||||||||| ||||||||||||||||||||    
T  8522942 ttggaattttcactagtttcattttgttcccttttgtcgccacaatcacagaatcatagta 8523002  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 8523034 - 8523087
Alignment:
Q  190 ccattcactatactattcctcatgtattcaaactcagtaacattcatcatggct 243  Q
    ||||||  ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  8523034 ccattccatattctattcctcatgtattccaactcagtaacattcatcatggct 8523087  T

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Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 11994751 - 11994583
Alignment:
Q  1 tgggaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagatgt 100  Q
    |||||||||||||||||||| | ||  ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11994751 tgggaaaggttaagccctataagtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaagatgt 11994652  T
Q  101 ttggaattttcaccagtttcannnnnnncccttttgtcgctacaatcacagaatcatagtagggtgcaa 169  Q
    |||||||||| |||  | |||       |||||||| ||| ||||||||||||||||||||||||||||    
T  11994651 ttggaattttaacccatgtcattttgttcccttttgacgccacaatcacagaatcatagtagggtgcaa 11994583  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 12248178 - 12248346
Alignment:
Q  1 tgggaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagatgt 100  Q
    |||||||||||||||||||| | ||  ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12248178 tgggaaaggttaagccctataagtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaagatgt 12248277  T
Q  101 ttggaattttcaccagtttcannnnnnncccttttgtcgctacaatcacagaatcatagtagggtgcaa 169  Q
    |||||||||| |||  | |||       ||||||||  || ||||||||||||||||||||||||||||    
T  12248278 ttggaattttaacccatgtcattttgttcccttttgatgccacaatcacagaatcatagtagggtgcaa 12248346  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 32682273 - 32682155
Alignment:
Q  1 tgggaaaggttaagccctatgatt------gaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaa 94  Q
    |||||||||||||||||| |||||      | ||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  32682273 tgggaaaggttaagccctctgattctgagtgcatgaagctccccaatagcatttggaatctctccttcaaatctgtttcttgacaaatcaatacttacaa 32682174  T
Q  95 agatgtttggaattttcac 113  Q
    || |  |||||||||||||    
T  32682173 agtttcttggaattttcac 32682155  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 42117471 - 42117631
Alignment:
Q  1 tgggaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagatgt 100  Q
    |||||||||||||||||| ||| || ||| || || |||||| | |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||    
T  42117471 tgggaaaggttaagccctttgagtgcatggaggtctccaatagcatttggaatctctccctcaaatttgttttttgacaaatcaataattacaaaaatgt 42117570  T
Q  101 ttggaattttcaccagtttcannnnnnncccttttgtcgctacaatcacagaatcatagta 161  Q
    ||||||||||||||| | |||       |||||||||||  ||||||||||||||||||||    
T  42117571 ttggaattttcaccaatgtcattttgctcccttttgtcgacacaatcacagaatcatagta 42117631  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 42128613 - 42128773
Alignment:
Q  1 tgggaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagatgt 100  Q
    ||||||||||| || ||||| | || |||||||||||||| | | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  42128613 tgggaaaggttgagtcctattagtgcatgaagctcaccaaaatcatttggaatatctccttcaaatttgtttcttgacaaatcaataattacaaagatat 42128712  T
Q  101 ttggaattttcaccagtttcannnnnnncccttttgtcgctacaatcacagaatcatagta 161  Q
    ||||||||||||||| | ||        |||||||||||| ||||||| ||||||||||||    
T  42128713 ttggaattttcaccaatgtccttttgttcccttttgtcgccacaatcatagaatcatagta 42128773  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 41444084 - 41444181
Alignment:
Q  1 tgggaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagat 98  Q
    ||||||||||| || |||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||    
T  41444084 tgggaaaggttgagtcctatgattgcatgaagctcaccaataacatttggaatgtctccttcaaatttgtttcctgaaaaatcaatacttacaaagat 41444181  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 42123219 - 42123328
Alignment:
Q  1 tgggaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagatgt 100  Q
    |||||||||||||||||||||| || ||| ||||  |||||| | |||||||||||||||||||||||||||||||||| ||||||| |||||||  | |    
T  42123219 tgggaaaggttaagccctatgagtgcatgtagctttccaatagcatttggaatctctccttcaaatttgtttcttgacatatcaatacttacaaactttt 42123318  T
Q  101 ttggaatttt 110  Q
    ||||||||||    
T  42123319 ttggaatttt 42123328  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 41713906 - 41713797
Alignment:
Q  4 gaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagatgtttg 103  Q
    ||||||||||||||| |||    ||||||||| |||||||| | ||||||||| || |||||||| |||||||| ||||||||| || ||||||| ||||    
T  41713906 gaaaggttaagccctttgagatcatgaagctctccaataacatctggaatctccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttg 41713807  T
Q  104 gaattttcac 113  Q
    ||||||||||    
T  41713806 gaattttcac 41713797  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41572370 - 41572300
Alignment:
Q  1 tgggaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtt 71  Q
    |||||||||||||||||| ||| ||| |||||||| |||||||| ||  |||||||||||||||| |||||    
T  41572370 tgggaaaggttaagccctttgagtgagtgaagctccccaataacattcagaatctctccttcaaaattgtt 41572300  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41618009 - 41617939
Alignment:
Q  1 tgggaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtt 71  Q
    |||||||||||||||||| ||| ||| |||||||| |||||||| ||  |||||||||||||||| |||||    
T  41618009 tgggaaaggttaagccctttgagtgagtgaagctccccaataacattcagaatctctccttcaaaattgtt 41617939  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 34240914 - 34240757
Alignment:
Q  4 gaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagatgtttg 103  Q
    ||||||||||||||| ||| ||  ||||| || || ||| | ||||||||  |||| | ||| ||||||||||| ||||||||| ||||||| ||  |||    
T  34240914 gaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatacttacaaacattgttg 34240815  T
Q  104 gaattttcaccagtttcannnnnnncccttttgtcgctacaatcacagaatcatagta 161  Q
    ||||||||  |||| |||        ||||||||||  ||| ||||||||||||||||    
T  34240814 gaattttcgtcagtgtcattttgatgccttttgtcgtcacagtcacagaatcatagta 34240757  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 34233141 - 34233030
Alignment:
Q  4 gaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagatgtttg 103  Q
    ||||||||||||||| ||| ||  ||||| || || ||| | ||||||||  |||| | ||| ||||||||||| ||||||||| |||||||| |  |||    
T  34233141 gaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatacttacaaagtttattg 34233042  T
Q  104 gaattttcacca 115  Q
    ||||||| ||||    
T  34233041 gaatttttacca 34233030  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 25523385 - 25523231
Alignment:
Q  1 tgggaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagatgt 100  Q
    |||||||||||||||||| ||| || ||||||||| |||||| | |||||||||||||||||||||||||||||||| |||||||||  ||||||  |      
T  25523385 tgggaaaggttaagccctttgagtgcatgaagctctccaatagcatttggaatctctccttcaaatttgtttcttgaaaaatcaatagatacaaacttta 25523286  T
Q  101 ttggaattttcaccagtttcannnnnnncccttttgtcgctacaatcacagaatc 155  Q
    ||||||||||||||| |||||       ||||||||| || ||| ||||||||||    
T  25523285 ttggaattttcaccaatttcatttgaatcccttttgttgccacagtcacagaatc 25523231  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 24140569 - 24140685
Alignment:
Q  1 tgggaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagatgt 100  Q
    ||||||||||||| |||| ||| || ||||||||| || ||| | |||||||||||||||||||||||||||||||||| ||| ||| |||||||  | |    
T  24140569 tgggaaaggttaatccctttgagtgcatgaagctctccgatagcatttggaatctctccttcaaatttgtttcttgacatatcgatacttacaaactttt 24140668  T
Q  101 ttggaattttcaccagt 117  Q
    |||||||||||||||||    
T  24140669 ttggaattttcaccagt 24140685  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 11117883 - 11117998
Alignment:
Q  2 gggaaaggttaagccctatgattgaatgaagctcaccaataacgtttggaatctctccttcaaatttgtttcttgacaaatcaataattacaaagatgtt 101  Q
    ||||||| ||||||||| ||| || ||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||| |||| ||  |  |    
T  11117883 gggaaagattaagccctttgagtgcatgaagctctccaatagcatttgtaatctctccttcaaatttgtttcttgacaaatcaatacttactaactttat 11117982  T
Q  102 tggaattttcaccagt 117  Q
    ||||||||||||||||    
T  11117983 tggaattttcaccagt 11117998  T

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