View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1684_low_3 (Length: 377)
Name: NF1684_low_3
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 36285893 - 36285666
Alignment:
| Q |
1 |
ccctagaaagccaaagcaattaatcatctttattgcaataaacccattgtttttatgattatccctgacccttcaaaaacagcagcgctccatagttctt |
100 |
Q |
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| T |
36285893 |
ccctagaaagccaaagcaattaatcatctttattgcaataaacccattgtttttatgattatccctgacccttcaaaaacagcagcgctccatagttctt |
36285794 |
T |
|
| Q |
101 |
tttatggaagccacaagaagttatacacttcaaaagggatgattatgacnnnnnnnattacaagtattgaaacacaaacactatannnnnnnnaacagct |
200 |
Q |
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| T |
36285793 |
tttatggaagccacaagaagttatacacttcaaaagggatgattatgactttttttattacaagtattgaaacacaaacactataatttttttaacagct |
36285694 |
T |
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| Q |
201 |
aacatcttcattgaaatagactatttcg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
36285693 |
aacatcttcattgaaatagactatttcg |
36285666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 226 - 358
Target Start/End: Complemental strand, 36285585 - 36285453
Alignment:
| Q |
226 |
tcggcccgttgaaaacacaacacaacacccagccataaacaagagaaaattacatagtaccctaccagaactatacagatcacatagcccaaaagaaaaa |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36285585 |
tcggcccgttgaaaacacaacacaacacccagccataaacaagagaaaattacaaagtaccctaccagaactatacagatcacataacccaaaagaaaaa |
36285486 |
T |
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| Q |
326 |
cgcagcagaaacatggagacagtctaagcatgc |
358 |
Q |
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| T |
36285485 |
cgcagcagaaaagtggaggcagtctaagcatgc |
36285453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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