View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1684_low_5 (Length: 321)
Name: NF1684_low_5
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 6024958 - 6024654
Alignment:
| Q |
19 |
cacctttccttttttctgatgcttcattaccatatagagaagaaagaaattcaaggacagagagccagtcatttgaagtagaaaaatcatcagcctgaga |
118 |
Q |
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| T |
6024958 |
cacctttccttttttctgatgcttcattaccatatagagaagaaagaaattcaaggacagagagccagtcatatgaagtagaaaaatcatcagcctgaga |
6024859 |
T |
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| Q |
119 |
catgcagttctgtaggtcaaaaataaaatatttaatgagtttgttatagaattaaataaggtactattgttaactttcttaaggttggtttgttaaggaa |
218 |
Q |
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| T |
6024858 |
catgcagttctgtaggtcaaaaataaaatatttaatgagtttgttatagaattaaataaggtactattgttaactttcttaaggttggtttgttaaagaa |
6024759 |
T |
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| Q |
219 |
ttaaagaatagtatagaaatatcttcactaacttccaatatggactatgcctttactagttggtattaaatttgt--gtgtattctgcattgctggatat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6024758 |
ttaaagaatagtatagaaatatcttcactaacttccaatatggactatgcctttactagttggtattaaatttgtgtgtgtattctgcattgctggatat |
6024659 |
T |
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| Q |
317 |
tttac |
321 |
Q |
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||||| |
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| T |
6024658 |
tttac |
6024654 |
T |
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