View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1684_low_6 (Length: 305)
Name: NF1684_low_6
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 280331 - 280050
Alignment:
| Q |
20 |
ctgcagttgcacatatagaaccaatggtaattgtttggatagacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttac |
119 |
Q |
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| T |
280331 |
ctgcagttgcacata--gaaccaatggtaattgtttggacagacgcattgaaaggggttgcatcaaaacccatttcctcaaacaaaaccaacgtgtttac |
280234 |
T |
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| Q |
120 |
atcgatatttaagaatgaccttggcacatggtaaaacctttgagatggttctccacaaccactcaaacatttatcagcattatattctcctctataatca |
219 |
Q |
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| T |
280233 |
atcattatttaagaatgaccttggcacatggtaaaacctttgagatggttctccacaaccactcaaacatttatcagcattatattctcctctataatca |
280134 |
T |
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| Q |
220 |
catgtgtcactgcatcctttattttcagcaagcattgcaggccaataccttccaatactttgaccattaacctatgctactcct |
303 |
Q |
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| T |
280133 |
catgtgtcactgcatcctttattttcagcaagcattgcaggccaataccttccaatactttgaccattaacccatgcttctcct |
280050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 290657 - 290571
Alignment:
| Q |
60 |
agacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
146 |
Q |
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| T |
290657 |
agacacattgaaagggccttcacctagacccagctcttcaaacaagaccaacgtgtttacatctttatttaagaatggccttggcac |
290571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 24525709 - 24525623
Alignment:
| Q |
60 |
agacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
146 |
Q |
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| T |
24525709 |
agacacattgaaagggccttcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
24525623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 24532354 - 24532295
Alignment:
| Q |
87 |
acccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
146 |
Q |
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| T |
24532354 |
acccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
24532295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 297
Target Start/End: Complemental strand, 24525586 - 24525553
Alignment:
| Q |
264 |
ataccttccaatactttgaccattaacctatgct |
297 |
Q |
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| T |
24525586 |
ataccttccaatactttgaccattaacccatgct |
24525553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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