View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1684_low_7 (Length: 304)
Name: NF1684_low_7
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 158 - 292
Target Start/End: Complemental strand, 26503932 - 26503797
Alignment:
| Q |
158 |
ggtcaacgatattaagtcaacattaaaagttttaacaaaatccacaacacttggaaattctaaaacaaatttatagtatcatatt-nnnnnnntggtact |
256 |
Q |
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| T |
26503932 |
ggtcaacgattttaagtcaacattaaaagttttaacaaaatccacaacacttgaaaattctaaaacaaatttttggtatcatattcaaaaaaatggtact |
26503833 |
T |
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| Q |
257 |
atcaaccatgtaccaaaaatagaatacatatttttg |
292 |
Q |
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| T |
26503832 |
atcaacaatgtaccaaaaatagaatacatatttttg |
26503797 |
T |
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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 26504077 - 26504015
Alignment:
| Q |
16 |
aatattaccccaaaataaacaatactttggcaaatctaaaagagatacataacattctttcag |
78 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26504077 |
aatattacccctgaataaacaatactttggcaaatctaaaagagatacataacattctttcag |
26504015 |
T |
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